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Mutant Information

Mutant Name	FN504-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN504-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13900899 G-A Hetero INTERGENIC
SBS Chr1 13959763 C-T Hetero INTERGENIC
SBS Chr1 20828451 G-C Hetero INTRON
SBS Chr1 21615869 A-G Hetero INTERGENIC
SBS Chr1 33166755 C-G Homo INTERGENIC
SBS Chr1 37804427 G-A Hetero INTERGENIC
SBS Chr1 40844487 A-G Hetero INTERGENIC
SBS Chr2 456852 G-A Homo INTERGENIC
SBS Chr2 1429270 A-C Homo INTRON
SBS Chr2 24905766 G-A Homo INTERGENIC
SBS Chr2 29803796 A-T Hetero INTERGENIC
SBS Chr3 20268885 G-A Hetero INTERGENIC
SBS Chr3 29646816 C-A Hetero INTERGENIC
SBS Chr4 1960494 T-G Hetero INTERGENIC
SBS Chr4 2024537 C-G Homo SYNONYMOUS_CODING
SBS Chr4 6636883 G-T Homo INTERGENIC
SBS Chr4 25177413 T-C Homo INTERGENIC
SBS Chr5 4591008 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g053200
SBS Chr5 5117289 G-A Homo INTERGENIC
SBS Chr5 27224828 T-C Hetero INTERGENIC
SBS Chr6 16965949 T-A Homo INTRON
SBS Chr7 21019525 G-A Hetero INTERGENIC
SBS Chr8 4761823 C-A Hetero INTERGENIC
SBS Chr8 8327857 A-G Hetero INTERGENIC
SBS Chr9 5433474 G-T Hetero INTERGENIC
SBS Chr11 5260858 A-G Hetero INTERGENIC
SBS Chr11 12688404 G-C Homo INTERGENIC
SBS Chr11 25158128 G-C Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 90225 90930 705
Deletion Chr12 4945769 4945770 1
Deletion Chr4 7931575 7931576 1
Deletion Chr7 8802106 8802115 9
Deletion Chr9 9861134 9861136 2
Deletion Chr7 10105698 10105703 5
Deletion Chr6 13902249 13902250 1
Deletion Chr1 13956728 13956729 1
Deletion Chr8 14783061 14783063 2
Deletion Chr2 16872679 16872681 2
Deletion Chr8 18614376 18614385 9
Deletion Chr12 19573556 19573565 9
Deletion Chr11 22138500 22138504 4
Deletion Chr7 22414700 22414708 8
Deletion Chr4 22571939 22571941 2
Deletion Chr7 24445129 24445133 4
Deletion Chr1 24602667 24602669 2
Deletion Chr5 28212001 28238000 25999 7
Deletion Chr1 28969979 28969990 11
Deletion Chr1 30351923 30351929 6
Deletion Chr3 36297286 36297294 8

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 28971706 28971708 1 OsKitaake01g281300
Insertion Chr2 28251065 28251068 2
Insertion Chr8 17352396 17352399 2
Insertion Chr11 6314393 6314396 2
Insertion Chr5 30230376 30230384 7

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 7901567 8209956
Inversion Chr4 7901573 8209973

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 1517023 Chr8 3195452
Translocation Chr9 1517029 Chr8 3198672
Translocation Chr9 6870480 Chr2 12793477
Translocation Chr9 6870514 Chr2 12793946 OsKitaake02g143200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13900899	G-A	Hetero	INTERGENIC
SBS	Chr1	13959763	C-T	Hetero	INTERGENIC
SBS	Chr1	20828451	G-C	Hetero	INTRON
SBS	Chr1	21615869	A-G	Hetero	INTERGENIC
SBS	Chr1	33166755	C-G	Homo	INTERGENIC
SBS	Chr1	37804427	G-A	Hetero	INTERGENIC
SBS	Chr1	40844487	A-G	Hetero	INTERGENIC
SBS	Chr2	456852	G-A	Homo	INTERGENIC
SBS	Chr2	1429270	A-C	Homo	INTRON
SBS	Chr2	24905766	G-A	Homo	INTERGENIC
SBS	Chr2	29803796	A-T	Hetero	INTERGENIC
SBS	Chr3	20268885	G-A	Hetero	INTERGENIC
SBS	Chr3	29646816	C-A	Hetero	INTERGENIC
SBS	Chr4	1960494	T-G	Hetero	INTERGENIC
SBS	Chr4	2024537	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr4	6636883	G-T	Homo	INTERGENIC
SBS	Chr4	25177413	T-C	Homo	INTERGENIC
SBS	Chr5	4591008	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g053200
SBS	Chr5	5117289	G-A	Homo	INTERGENIC
SBS	Chr5	27224828	T-C	Hetero	INTERGENIC
SBS	Chr6	16965949	T-A	Homo	INTRON
SBS	Chr7	21019525	G-A	Hetero	INTERGENIC
SBS	Chr8	4761823	C-A	Hetero	INTERGENIC
SBS	Chr8	8327857	A-G	Hetero	INTERGENIC
SBS	Chr9	5433474	G-T	Hetero	INTERGENIC
SBS	Chr11	5260858	A-G	Hetero	INTERGENIC
SBS	Chr11	12688404	G-C	Homo	INTERGENIC
SBS	Chr11	25158128	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	90225	90930	705
Deletion	Chr12	4945769	4945770	1
Deletion	Chr4	7931575	7931576	1
Deletion	Chr7	8802106	8802115	9
Deletion	Chr9	9861134	9861136	2
Deletion	Chr7	10105698	10105703	5
Deletion	Chr6	13902249	13902250	1
Deletion	Chr1	13956728	13956729	1
Deletion	Chr8	14783061	14783063	2
Deletion	Chr2	16872679	16872681	2
Deletion	Chr8	18614376	18614385	9
Deletion	Chr12	19573556	19573565	9
Deletion	Chr11	22138500	22138504	4
Deletion	Chr7	22414700	22414708	8
Deletion	Chr4	22571939	22571941	2
Deletion	Chr7	24445129	24445133	4
Deletion	Chr1	24602667	24602669	2
Deletion	Chr5	28212001	28238000	25999	7
Deletion	Chr1	28969979	28969990	11
Deletion	Chr1	30351923	30351929	6
Deletion	Chr3	36297286	36297294	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7901567	8209956
Inversion	Chr4	7901573	8209973

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes