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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN505-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN505-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4758877 A-C Homo INTERGENIC
SBS Chr1 6008256 G-A Hetero INTRON
SBS Chr1 6202444 C-A Hetero INTERGENIC
SBS Chr1 27411853 A-G Hetero INTERGENIC
SBS Chr1 42008067 T-A Homo INTERGENIC
SBS Chr2 11109356 C-T Hetero INTERGENIC
SBS Chr2 11109358 C-T Hetero INTERGENIC
SBS Chr3 530796 T-A Hetero INTERGENIC
SBS Chr3 530797 A-T Hetero INTERGENIC
SBS Chr3 530798 C-A Hetero INTERGENIC
SBS Chr3 2268910 C-A Hetero INTERGENIC
SBS Chr3 5109580 A-T Hetero INTRON
SBS Chr3 12292502 T-A Homo INTERGENIC
SBS Chr3 16003300 T-A Homo NON_SYNONYMOUS_CODING OsKitaake03g204700
SBS Chr3 19105757 G-C Homo INTERGENIC
SBS Chr3 25365667 A-T Homo INTERGENIC
SBS Chr3 28015735 C-T Hetero INTRON
SBS Chr3 30084677 A-G Hetero INTERGENIC
SBS Chr3 35087574 A-T Homo INTRON
SBS Chr4 11207711 A-G Homo INTERGENIC
SBS Chr4 16125734 C-T Homo INTERGENIC
SBS Chr4 29976446 G-A Homo INTERGENIC
SBS Chr5 3848813 C-T Homo INTERGENIC
SBS Chr5 11492871 G-T Hetero INTERGENIC
SBS Chr5 15064198 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g114801
SBS Chr5 15064199 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 1294109 T-A Hetero INTERGENIC
SBS Chr6 1749543 A-G Hetero INTERGENIC
SBS Chr6 12801885 G-T Hetero INTERGENIC
SBS Chr7 3559225 A-G Hetero INTRON
SBS Chr7 9968507 A-T Homo INTRON
SBS Chr7 25534384 G-A Homo UTR_3_PRIME
SBS Chr8 10542956 C-A Hetero INTERGENIC
SBS Chr8 15565946 G-A Homo INTERGENIC
SBS Chr8 20769332 T-C Hetero INTRON
SBS Chr8 20769356 G-A Hetero INTRON
SBS Chr8 26067401 C-A Hetero INTERGENIC
SBS Chr10 5244085 G-T Homo INTERGENIC
SBS Chr10 17817002 T-C Hetero UTR_3_PRIME
SBS Chr10 22637437 C-A Hetero INTERGENIC
SBS Chr10 22637438 G-A Hetero INTERGENIC
SBS Chr10 22637441 G-A Hetero INTERGENIC
SBS Chr10 22682873 C-T Hetero INTERGENIC
SBS Chr10 22994159 A-T Hetero UTR_3_PRIME
SBS Chr11 17591635 A-C Hetero INTERGENIC
SBS Chr12 10000019 G-T Hetero INTERGENIC
SBS Chr12 12133425 G-A Hetero INTERGENIC
SBS Chr12 21026532 G-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 8419189 8419190 1
Deletion Chr8 10043896 10043897 1
Deletion Chr1 14613001 14777000 163999 16
Deletion Chr1 17434334 17434335 1
Deletion Chr12 19637608 19637615 7
Deletion Chr2 19646939 19646941 2
Deletion Chr12 20327665 20327668 3
Deletion Chr2 22353897 22353899 2
Deletion Chr3 22788520 22788536 16
Deletion Chr8 28506548 28506550 2
Deletion Chr2 30815925 30815937 12
Deletion Chr1 32137820 32137827 7
Deletion Chr4 32729112 32729115 3
Deletion Chr3 33397718 33397720 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3241522 3241531 8
Insertion Chr2 24332900 24332903 2
Insertion Chr3 30082250 30082253 2
Insertion Chr11 17860221 17860224 2
Insertion Chr3 22492942 22492944 1
Insertion Chr5 12633210 12633212 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 14581452 14614537 OsKitaake01g165900
Inversion Chr1 14581457 14775476 OsKitaake01g167100

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 9982757 Chr1 44170781 OsKitaake01g493300
Translocation Chr7 9983376 Chr1 44170775 OsKitaake01g493300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4758877	A-C	Homo	INTERGENIC
SBS	Chr1	6008256	G-A	Hetero	INTRON
SBS	Chr1	6202444	C-A	Hetero	INTERGENIC
SBS	Chr1	27411853	A-G	Hetero	INTERGENIC
SBS	Chr1	42008067	T-A	Homo	INTERGENIC
SBS	Chr2	11109356	C-T	Hetero	INTERGENIC
SBS	Chr2	11109358	C-T	Hetero	INTERGENIC
SBS	Chr3	530796	T-A	Hetero	INTERGENIC
SBS	Chr3	530797	A-T	Hetero	INTERGENIC
SBS	Chr3	530798	C-A	Hetero	INTERGENIC
SBS	Chr3	2268910	C-A	Hetero	INTERGENIC
SBS	Chr3	5109580	A-T	Hetero	INTRON
SBS	Chr3	12292502	T-A	Homo	INTERGENIC
SBS	Chr3	16003300	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g204700
SBS	Chr3	19105757	G-C	Homo	INTERGENIC
SBS	Chr3	25365667	A-T	Homo	INTERGENIC
SBS	Chr3	28015735	C-T	Hetero	INTRON
SBS	Chr3	30084677	A-G	Hetero	INTERGENIC
SBS	Chr3	35087574	A-T	Homo	INTRON
SBS	Chr4	11207711	A-G	Homo	INTERGENIC
SBS	Chr4	16125734	C-T	Homo	INTERGENIC
SBS	Chr4	29976446	G-A	Homo	INTERGENIC
SBS	Chr5	3848813	C-T	Homo	INTERGENIC
SBS	Chr5	11492871	G-T	Hetero	INTERGENIC
SBS	Chr5	15064198	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g114801
SBS	Chr5	15064199	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	1294109	T-A	Hetero	INTERGENIC
SBS	Chr6	1749543	A-G	Hetero	INTERGENIC
SBS	Chr6	12801885	G-T	Hetero	INTERGENIC
SBS	Chr7	3559225	A-G	Hetero	INTRON
SBS	Chr7	9968507	A-T	Homo	INTRON
SBS	Chr7	25534384	G-A	Homo	UTR_3_PRIME
SBS	Chr8	10542956	C-A	Hetero	INTERGENIC
SBS	Chr8	15565946	G-A	Homo	INTERGENIC
SBS	Chr8	20769332	T-C	Hetero	INTRON
SBS	Chr8	20769356	G-A	Hetero	INTRON
SBS	Chr8	26067401	C-A	Hetero	INTERGENIC
SBS	Chr10	5244085	G-T	Homo	INTERGENIC
SBS	Chr10	17817002	T-C	Hetero	UTR_3_PRIME
SBS	Chr10	22637437	C-A	Hetero	INTERGENIC
SBS	Chr10	22637438	G-A	Hetero	INTERGENIC
SBS	Chr10	22637441	G-A	Hetero	INTERGENIC
SBS	Chr10	22682873	C-T	Hetero	INTERGENIC
SBS	Chr10	22994159	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	17591635	A-C	Hetero	INTERGENIC
SBS	Chr12	10000019	G-T	Hetero	INTERGENIC
SBS	Chr12	12133425	G-A	Hetero	INTERGENIC
SBS	Chr12	21026532	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	8419189	8419190	1
Deletion	Chr8	10043896	10043897	1
Deletion	Chr1	14613001	14777000	163999	16
Deletion	Chr1	17434334	17434335	1
Deletion	Chr12	19637608	19637615	7
Deletion	Chr2	19646939	19646941	2
Deletion	Chr12	20327665	20327668	3
Deletion	Chr2	22353897	22353899	2
Deletion	Chr3	22788520	22788536	16
Deletion	Chr8	28506548	28506550	2
Deletion	Chr2	30815925	30815937	12
Deletion	Chr1	32137820	32137827	7
Deletion	Chr4	32729112	32729115	3
Deletion	Chr3	33397718	33397720	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	14581452	14614537	OsKitaake01g165900
Inversion	Chr1	14581457	14775476	OsKitaake01g167100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes