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| Mutant Information |
|---|
| Mutant Name | FN506-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN506-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6160352 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 12616072 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 14967128 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 33695096 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 5674835 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g078500 |
| SBS | Chr2 | 7706800 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 11459380 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 15340849 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 16362610 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 20323016 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 4142531 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 21669254 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23902163 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 14024595 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 27372263 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 24682708 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 2413209 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 14157501 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 21001140 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 5706917 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 19290457 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 876206 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 9124052 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 24359938 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24361725 | G-C | Hetero | INTRON | |
| SBS | Chr12 | 21425207 | A-T | Hetero | INTERGENIC |
Deletions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 16057395 | 16057405 | 10 | |
| Deletion | Chr9 | 16401772 | 16401773 | 1 |
Insertions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 34231551 | 34231556 | 4 | |
| Insertion | Chr3 | 12687326 | 12687329 | 2 | |
| Insertion | Chr5 | 14412962 | 14412965 | 2 | |
| Insertion | Chr8 | 27257524 | 27257527 | 2 | |
| Insertion | Chr11 | 19899294 | 19899297 | 2 | |
| Insertion | Chr3 | 6885482 | 6885485 | 2 | OsKitaake03g097400  |
| Insertion | Chr5 | 21767326 | 21767332 | 5 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 9616952 | 9973530 | OsKitaake08g092000 |
| Inversion | Chr8 | 9616959 | 9973531 | OsKitaake08g092000 |
| Inversion | Chr9 | 15931298 | 16188453 | 2 |
| Inversion | Chr2 | 18510975 | 18630834 | OsKitaake02g183600 |
| Inversion | Chr2 | 18511280 | 18630841 | OsKitaake02g183600 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 8047059 | Chr9 | 15931293 | OsKitaake09g113500 |
| Translocation | Chr12 | 8292396 | Chr8 | 28707591 | OsKitaake08g246300 |
| Translocation | Chr12 | 8292409 | Chr2 | 18511046 | |
| Translocation | Chr9 | 16779058 | Chr8 | 28707572 | 2 |