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Mutant Information

Mutant Name	FN507-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN507-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3860959 C-T Hetero INTERGENIC
SBS Chr1 4344818 T-C Homo SYNONYMOUS_CODING
SBS Chr1 5180568 G-T Homo INTERGENIC
SBS Chr1 14262458 C-T Homo INTERGENIC
SBS Chr1 21348667 G-A Hetero INTRON
SBS Chr1 39514589 A-T Hetero INTRON
SBS Chr2 12634716 C-T Hetero INTERGENIC
SBS Chr2 12634717 T-C Hetero INTERGENIC
SBS Chr2 29178862 C-T Hetero INTERGENIC
SBS Chr3 25065704 C-T Hetero INTERGENIC
SBS Chr3 34201635 T-A Hetero INTERGENIC
SBS Chr4 9982491 C-T Hetero INTERGENIC
SBS Chr4 13184764 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g062300
SBS Chr4 15994362 A-T Homo INTERGENIC
SBS Chr4 18252939 C-T Hetero INTERGENIC
SBS Chr4 20223348 T-C Hetero INTERGENIC
SBS Chr5 8905257 C-A Hetero INTERGENIC
SBS Chr5 9029861 C-T Homo INTERGENIC
SBS Chr5 12126579 G-T Hetero INTERGENIC
SBS Chr5 14219610 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g109000
SBS Chr6 5621542 G-A Hetero INTERGENIC
SBS Chr6 15466214 C-A Hetero INTERGENIC
SBS Chr7 3202435 G-T Homo INTRON
SBS Chr7 14372108 A-G Hetero INTERGENIC
SBS Chr8 11669367 C-T Hetero INTERGENIC
SBS Chr8 19191846 A-T Hetero INTERGENIC
SBS Chr8 19191847 T-C Hetero INTERGENIC
SBS Chr9 14712306 A-T Hetero INTERGENIC
SBS Chr10 1615698 G-T Homo INTERGENIC
SBS Chr10 1615700 G-T Homo INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr11 8778713 G-C Homo INTERGENIC
SBS Chr11 9264639 G-A Homo SYNONYMOUS_CODING
SBS Chr12 4505008 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 183208 183222 14
Deletion Chr8 2962506 2962509 3
Deletion Chr3 6938364 6938366 2
Deletion Chr11 8195802 8195817 15
Deletion Chr9 8212960 8212962 2
Deletion Chr3 9525925 9525932 7
Deletion Chr10 10336262 10336272 10
Deletion Chr11 16285660 16285666 6
Deletion Chr1 17606529 17606534 5
Deletion Chr2 22963054 22963063 9
Deletion Chr1 23887376 23887378 2
Deletion Chr6 26800873 26800877 4
Deletion Chr6 27422963 27422978 15 OsKitaake06g247500
Deletion Chr3 30181533 30181534 1 OsKitaake03g316500

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8493493 8493501 7
Insertion Chr2 14625215 14625218 2
Insertion Chr6 16377771 16377774 2
Insertion Chr8 4831893 4831896 2
Insertion Chr8 15261271 15261274 2
Insertion Chr12 1533551 1533553 1
Insertion Chr4 10454656 10454658 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 1656717 1693957

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5012672 Chr4 3828559
Translocation Chr7 14372247 Chr1 29046981 OsKitaake01g282000
Translocation Chr11 25741546 Chr9 3231283

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3860959	C-T	Hetero	INTERGENIC
SBS	Chr1	4344818	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr1	5180568	G-T	Homo	INTERGENIC
SBS	Chr1	14262458	C-T	Homo	INTERGENIC
SBS	Chr1	21348667	G-A	Hetero	INTRON
SBS	Chr1	39514589	A-T	Hetero	INTRON
SBS	Chr2	12634716	C-T	Hetero	INTERGENIC
SBS	Chr2	12634717	T-C	Hetero	INTERGENIC
SBS	Chr2	29178862	C-T	Hetero	INTERGENIC
SBS	Chr3	25065704	C-T	Hetero	INTERGENIC
SBS	Chr3	34201635	T-A	Hetero	INTERGENIC
SBS	Chr4	9982491	C-T	Hetero	INTERGENIC
SBS	Chr4	13184764	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g062300
SBS	Chr4	15994362	A-T	Homo	INTERGENIC
SBS	Chr4	18252939	C-T	Hetero	INTERGENIC
SBS	Chr4	20223348	T-C	Hetero	INTERGENIC
SBS	Chr5	8905257	C-A	Hetero	INTERGENIC
SBS	Chr5	9029861	C-T	Homo	INTERGENIC
SBS	Chr5	12126579	G-T	Hetero	INTERGENIC
SBS	Chr5	14219610	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g109000
SBS	Chr6	5621542	G-A	Hetero	INTERGENIC
SBS	Chr6	15466214	C-A	Hetero	INTERGENIC
SBS	Chr7	3202435	G-T	Homo	INTRON
SBS	Chr7	14372108	A-G	Hetero	INTERGENIC
SBS	Chr8	11669367	C-T	Hetero	INTERGENIC
SBS	Chr8	19191846	A-T	Hetero	INTERGENIC
SBS	Chr8	19191847	T-C	Hetero	INTERGENIC
SBS	Chr9	14712306	A-T	Hetero	INTERGENIC
SBS	Chr10	1615698	G-T	Homo	INTERGENIC
SBS	Chr10	1615700	G-T	Homo	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr11	8778713	G-C	Homo	INTERGENIC
SBS	Chr11	9264639	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr12	4505008	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	183208	183222	14
Deletion	Chr8	2962506	2962509	3
Deletion	Chr3	6938364	6938366	2
Deletion	Chr11	8195802	8195817	15
Deletion	Chr9	8212960	8212962	2
Deletion	Chr3	9525925	9525932	7
Deletion	Chr10	10336262	10336272	10
Deletion	Chr11	16285660	16285666	6
Deletion	Chr1	17606529	17606534	5
Deletion	Chr2	22963054	22963063	9
Deletion	Chr1	23887376	23887378	2
Deletion	Chr6	26800873	26800877	4
Deletion	Chr6	27422963	27422978	15	OsKitaake06g247500
Deletion	Chr3	30181533	30181534	1	OsKitaake03g316500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1656717	1693957

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes