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Mutant Information

Mutant Name	FN509-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN509-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28387724 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g274800
SBS Chr1 32747669 T-C Hetero INTERGENIC
SBS Chr2 5851585 G-C Hetero INTRON
SBS Chr2 9457280 G-C Hetero INTERGENIC
SBS Chr3 7214682 C-T Homo INTERGENIC
SBS Chr3 7214683 C-T Homo INTERGENIC
SBS Chr3 21518239 G-A Homo INTERGENIC
SBS Chr3 22862811 C-A Homo INTRON
SBS Chr3 24399010 G-A Homo INTERGENIC
SBS Chr3 31363117 T-C Hetero INTERGENIC
SBS Chr4 2089839 G-A Homo INTERGENIC
SBS Chr4 3581489 G-A Hetero INTERGENIC
SBS Chr4 14023355 T-A Hetero INTERGENIC
SBS Chr4 14218103 A-C Hetero INTERGENIC
SBS Chr4 14251678 A-T Hetero INTERGENIC
SBS Chr4 15074272 C-T Hetero STOP_GAINED OsKitaake04g071500
SBS Chr4 17214283 G-A Hetero INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr5 16248334 C-T Hetero INTERGENIC
SBS Chr5 23042419 A-G Homo NON_SYNONYMOUS_CODING OsKitaake05g191600
SBS Chr6 41471 A-T Hetero INTERGENIC
SBS Chr6 1277507 G-A Hetero INTERGENIC
SBS Chr6 7100758 C-T Hetero INTERGENIC
SBS Chr6 7187461 G-T Hetero INTERGENIC
SBS Chr6 8693998 C-T Hetero INTERGENIC
SBS Chr6 11537066 T-A Homo INTERGENIC
SBS Chr6 15606936 C-T Homo INTERGENIC
SBS Chr6 18906055 G-A Homo INTERGENIC
SBS Chr6 20855242 A-G Homo INTERGENIC
SBS Chr7 3772127 T-A Hetero INTERGENIC
SBS Chr7 11548312 T-A Hetero INTERGENIC
SBS Chr7 14727119 C-T Hetero INTERGENIC
SBS Chr7 23342560 G-T Homo INTERGENIC
SBS Chr8 8221252 G-T Homo INTERGENIC
SBS Chr8 9401287 C-T Homo INTERGENIC
SBS Chr8 19404422 C-T Homo INTERGENIC
SBS Chr8 22229671 G-T Hetero INTERGENIC
SBS Chr9 4833996 G-T Hetero INTRON
SBS Chr9 11939844 G-A Hetero INTERGENIC
SBS Chr9 11939846 G-A Hetero INTERGENIC
SBS Chr10 1355918 C-T Homo INTERGENIC
SBS Chr10 13544775 G-A Hetero INTERGENIC
SBS Chr11 723288 C-T Homo INTERGENIC
SBS Chr11 12630389 C-T Homo INTERGENIC
SBS Chr11 15359959 C-G Homo INTERGENIC
SBS Chr12 19122321 A-T Hetero INTRON

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 734216 734218 2
Deletion Chr4 2012001 2430000 417999 16
Deletion Chr4 2168206 2168207 1
Deletion Chr4 2433001 2446000 12999 OsKitaake04g015100
Deletion Chr4 2448001 2691000 242999 6
Deletion Chr5 4502001 4685000 182999 16
Deletion Chr2 5303425 5303427 2
Deletion Chr10 7419532 7419535 3
Deletion Chr7 7422331 7422333 2
Deletion Chr7 8301454 8301456 2
Deletion Chr3 9134131 9134137 6
Deletion Chr1 10542206 10542208 2
Deletion Chr10 12438001 12619000 180999 18
Deletion Chr12 13539001 13617000 77999 4
Deletion Chr4 14986832 14986833 1 OsKitaake04g072000
Deletion Chr11 15300771 15300777 6
Deletion Chr8 15768589 15768609 20
Deletion Chr7 15787073 15787075 2
Deletion Chr1 17711132 17711133 1
Deletion Chr6 20443530 20443544 14
Deletion Chr6 23240084 23240085 1
Deletion Chr2 25471795 25471796 1 OsKitaake02g251300
Deletion Chr3 26798836 26798838 2
Deletion Chr4 28155543 28155544 1
Deletion Chr11 29045293 29045295 2
Deletion Chr5 29415728 29415730 2
Deletion Chr1 33619001 33682000 62999 10
Deletion Chr1 39013794 39013803 9

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1716285 1716288 2
Insertion Chr1 4528057 4528060 2
Insertion Chr2 30602361 30602364 2
Insertion Chr3 14519147 14519150 2
Insertion Chr8 3379517 3379520 2
Insertion Chr12 574573 574576 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 20006419 20210830 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 27164856 Chr3 16288244

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28387724	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g274800
SBS	Chr1	32747669	T-C	Hetero	INTERGENIC
SBS	Chr2	5851585	G-C	Hetero	INTRON
SBS	Chr2	9457280	G-C	Hetero	INTERGENIC
SBS	Chr3	7214682	C-T	Homo	INTERGENIC
SBS	Chr3	7214683	C-T	Homo	INTERGENIC
SBS	Chr3	21518239	G-A	Homo	INTERGENIC
SBS	Chr3	22862811	C-A	Homo	INTRON
SBS	Chr3	24399010	G-A	Homo	INTERGENIC
SBS	Chr3	31363117	T-C	Hetero	INTERGENIC
SBS	Chr4	2089839	G-A	Homo	INTERGENIC
SBS	Chr4	3581489	G-A	Hetero	INTERGENIC
SBS	Chr4	14023355	T-A	Hetero	INTERGENIC
SBS	Chr4	14218103	A-C	Hetero	INTERGENIC
SBS	Chr4	14251678	A-T	Hetero	INTERGENIC
SBS	Chr4	15074272	C-T	Hetero	STOP_GAINED	OsKitaake04g071500
SBS	Chr4	17214283	G-A	Hetero	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr5	16248334	C-T	Hetero	INTERGENIC
SBS	Chr5	23042419	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g191600
SBS	Chr6	41471	A-T	Hetero	INTERGENIC
SBS	Chr6	1277507	G-A	Hetero	INTERGENIC
SBS	Chr6	7100758	C-T	Hetero	INTERGENIC
SBS	Chr6	7187461	G-T	Hetero	INTERGENIC
SBS	Chr6	8693998	C-T	Hetero	INTERGENIC
SBS	Chr6	11537066	T-A	Homo	INTERGENIC
SBS	Chr6	15606936	C-T	Homo	INTERGENIC
SBS	Chr6	18906055	G-A	Homo	INTERGENIC
SBS	Chr6	20855242	A-G	Homo	INTERGENIC
SBS	Chr7	3772127	T-A	Hetero	INTERGENIC
SBS	Chr7	11548312	T-A	Hetero	INTERGENIC
SBS	Chr7	14727119	C-T	Hetero	INTERGENIC
SBS	Chr7	23342560	G-T	Homo	INTERGENIC
SBS	Chr8	8221252	G-T	Homo	INTERGENIC
SBS	Chr8	9401287	C-T	Homo	INTERGENIC
SBS	Chr8	19404422	C-T	Homo	INTERGENIC
SBS	Chr8	22229671	G-T	Hetero	INTERGENIC
SBS	Chr9	4833996	G-T	Hetero	INTRON
SBS	Chr9	11939844	G-A	Hetero	INTERGENIC
SBS	Chr9	11939846	G-A	Hetero	INTERGENIC
SBS	Chr10	1355918	C-T	Homo	INTERGENIC
SBS	Chr10	13544775	G-A	Hetero	INTERGENIC
SBS	Chr11	723288	C-T	Homo	INTERGENIC
SBS	Chr11	12630389	C-T	Homo	INTERGENIC
SBS	Chr11	15359959	C-G	Homo	INTERGENIC
SBS	Chr12	19122321	A-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	734216	734218	2
Deletion	Chr4	2012001	2430000	417999	16
Deletion	Chr4	2168206	2168207	1
Deletion	Chr4	2433001	2446000	12999	OsKitaake04g015100
Deletion	Chr4	2448001	2691000	242999	6
Deletion	Chr5	4502001	4685000	182999	16
Deletion	Chr2	5303425	5303427	2
Deletion	Chr10	7419532	7419535	3
Deletion	Chr7	7422331	7422333	2
Deletion	Chr7	8301454	8301456	2
Deletion	Chr3	9134131	9134137	6
Deletion	Chr1	10542206	10542208	2
Deletion	Chr10	12438001	12619000	180999	18
Deletion	Chr12	13539001	13617000	77999	4
Deletion	Chr4	14986832	14986833	1	OsKitaake04g072000
Deletion	Chr11	15300771	15300777	6
Deletion	Chr8	15768589	15768609	20
Deletion	Chr7	15787073	15787075	2
Deletion	Chr1	17711132	17711133	1
Deletion	Chr6	20443530	20443544	14
Deletion	Chr6	23240084	23240085	1
Deletion	Chr2	25471795	25471796	1	OsKitaake02g251300
Deletion	Chr3	26798836	26798838	2
Deletion	Chr4	28155543	28155544	1
Deletion	Chr11	29045293	29045295	2
Deletion	Chr5	29415728	29415730	2
Deletion	Chr1	33619001	33682000	62999	10
Deletion	Chr1	39013794	39013803	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	20006419	20210830	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes