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| Mutant Information |
|---|
| Mutant Name | FN510-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN510-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15019522 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 27403660 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 32543906 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 38637327 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 43115999 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 4095128 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 13264632 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 13869251 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 26387957 | A-T | Homo | INTRON | |
| SBS | Chr3 | 10466599 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 13659546 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15613695 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 33309526 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g355700 |
| SBS | Chr3 | 33309527 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g355700 |
| SBS | Chr4 | 3391120 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 11264777 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 15314590 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 17236461 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 17625798 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 19029741 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 34126983 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 34126984 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9574337 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 172692 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 9804277 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 466631 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 7871063 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 24372692 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1028115 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 5409985 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1374157 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 20874542 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 2463455 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 24123377 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 24174586 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 22364436 | A-T | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1408805 | 1408806 | 1 | |
| Deletion | Chr2 | 1464873 | 1464874 | 1 | |
| Deletion | Chr3 | 4089589 | 4089590 | 1 | |
| Deletion | Chr4 | 5631836 | 5631841 | 5 | |
| Deletion | Chr12 | 8214444 | 8214445 | 1 | |
| Deletion | Chr6 | 8684867 | 8684874 | 7 | |
| Deletion | Chr6 | 13798007 | 13798012 | 5 | |
| Deletion | Chr5 | 17443054 | 17443056 | 2 | |
| Deletion | Chr6 | 18558784 | 18558785 | 1 | |
| Deletion | Chr11 | 23482063 | 23482064 | 1 | |
| Deletion | Chr3 | 37147668 | 37147680 | 12 | OsKitaake03g415300 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 30769085 | 30769090 | 4 | |
| Insertion | Chr5 | 7007137 | 7007140 | 2 | |
| Insertion | Chr10 | 20069263 | 20069266 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 2755811 | 3502713 | OsKitaake09g018000 |
| Inversion | Chr1 | 18723187 | 19219158 | |
| Inversion | Chr1 | 18723188 | 19219168 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 2755862 | Chr2 | 18439549 | OsKitaake02g182700 |
| Translocation | Chr9 | 3502717 | Chr2 | 18440174 | OsKitaake09g018000 |
| Translocation | Chr11 | 17284953 | Chr7 | 4034749 | 2 |
| Translocation | Chr11 | 17291906 | Chr7 | 4034743 | 2 |