Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN511-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN511-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3014698 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 19298709 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34552700 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 44165630 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 9406228 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 15167314 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 19196890 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21411546 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21482251 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 22524722 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 28192028 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 6340123 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g031800 |
| SBS | Chr4 | 6838291 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 7313232 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8004736 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 29204699 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 13735254 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 14549754 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 26327630 | T-C | Homo | INTRON | |
| SBS | Chr6 | 29605310 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 7545926 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14482560 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15328020 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18235279 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 311777 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g004400 |
| SBS | Chr8 | 3862456 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 11288953 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 12274636 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 5160632 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 8885829 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 21247523 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7960429 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 10965917 | T-G | Homo | INTERGENIC | |
| SBS | Chr11 | 23437473 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g186800 |
| SBS | Chr12 | 4127035 | A-T | Hetero | INTRON | |
| SBS | Chr12 | 7474611 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 20526549 | T-C | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 728429 | 728496 | 67 | |
| Deletion | Chr9 | 3585917 | 3586098 | 181 | |
| Deletion | Chr10 | 3767816 | 3767819 | 3 | |
| Deletion | Chr11 | 5911507 | 5911508 | 1 | |
| Deletion | Chr1 | 7676577 | 7676580 | 3 | OsKitaake01g096300 |
| Deletion | Chr2 | 10917515 | 10917517 | 2 | |
| Deletion | Chr12 | 14089605 | 14089606 | 1 | |
| Deletion | Chr11 | 17869043 | 17869051 | 8 | |
| Deletion | Chr6 | 21271616 | 21271617 | 1 | OsKitaake06g188500 |
| Deletion | Chr4 | 21286290 | 21286298 | 8 | |
| Deletion | Chr12 | 23141858 | 23141862 | 4 | |
| Deletion | Chr4 | 25016831 | 25016836 | 5 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 23419542 | 23419549 | 6 | |
| Insertion | Chr2 | 13865666 | 13865669 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 34106096 | 34904502 | |
| Inversion | Chr2 | 34106105 | 34904501 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 3540897 | Chr8 | 5575525 | |
| Translocation | Chr10 | 3540899 | Chr8 | 3826165 |