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Mutant Information

Mutant Name	FN512-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN512-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Homo INTERGENIC
SBS Chr1 13398353 C-T Hetero INTERGENIC
SBS Chr2 19197994 G-T Homo UTR_5_PRIME
SBS Chr2 21531599 T-A Homo NON_SYNONYMOUS_CODING OsKitaake02g208200
SBS Chr2 30396590 A-G Hetero INTERGENIC
SBS Chr3 497376 C-T Homo INTERGENIC
SBS Chr3 543149 A-T Hetero INTERGENIC
SBS Chr3 22220363 C-T Homo INTERGENIC
SBS Chr3 25968138 C-T Hetero INTERGENIC
SBS Chr4 5842817 A-C Hetero INTERGENIC
SBS Chr4 6738033 T-A Hetero INTERGENIC
SBS Chr4 15752760 G-A Hetero INTERGENIC
SBS Chr4 21871606 A-G Homo INTERGENIC
SBS Chr4 21871612 T-G Homo INTERGENIC
SBS Chr4 22934238 A-C Hetero INTERGENIC
SBS Chr4 31099612 T-A Hetero INTERGENIC
SBS Chr5 9197939 G-A Homo INTERGENIC
SBS Chr5 13670253 A-C Homo INTERGENIC
SBS Chr6 3860573 T-C Hetero UTR_3_PRIME
SBS Chr6 13277738 C-T Homo INTERGENIC
SBS Chr6 24887724 A-T Hetero INTERGENIC
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 4555351 T-C Hetero INTERGENIC
SBS Chr7 5096728 G-C Hetero INTERGENIC
SBS Chr7 5142591 C-T Hetero INTERGENIC
SBS Chr7 8481612 G-T Hetero INTERGENIC
SBS Chr7 10493148 C-A Hetero INTERGENIC
SBS Chr7 14134591 G-T Hetero INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr8 13995283 G-A Homo INTERGENIC
SBS Chr9 15711162 T-C Hetero INTERGENIC
SBS Chr9 20680787 A-G Hetero INTERGENIC
SBS Chr10 3813154 C-T Hetero INTERGENIC
SBS Chr10 13665896 G-A Hetero INTERGENIC
SBS Chr10 15037705 A-T Hetero INTERGENIC
SBS Chr10 21108630 C-A Hetero SYNONYMOUS_CODING
SBS Chr10 21108631 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g163800
SBS Chr11 3719824 T-A Hetero INTERGENIC
SBS Chr11 9774973 T-A Hetero INTERGENIC
SBS Chr11 19192117 A-T Hetero INTERGENIC
SBS Chr11 19192118 T-A Hetero INTERGENIC
SBS Chr11 21692209 T-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 4291711 4291713 2
Deletion Chr10 5586001 5667000 80999 8
Deletion Chr4 5631113 5631116 3
Deletion Chr2 8839246 8839248 2
Deletion Chr4 10335753 10335754 1
Deletion Chr6 10636524 10636624 100 OsKitaake06g119501
Deletion Chr5 10928001 10937000 8999
Deletion Chr8 11376606 11376607 1
Deletion Chr12 12843663 12843666 3
Deletion Chr6 13549783 13549788 5
Deletion Chr11 13806342 13806351 9
Deletion Chr12 14308632 14308644 12
Deletion Chr1 15229229 15229231 2
Deletion Chr1 15965846 15965851 5
Deletion Chr1 18014635 18014720 85
Deletion Chr2 25009685 25009767 82
Deletion Chr7 26500560 26500561 1 OsKitaake07g244800

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 18113973 18113977 3
Insertion Chr7 26091602 26091605 2
Insertion Chr9 4671009 4671012 2
Insertion Chr11 12164976 12164979 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 23772071 Chr1 6288491
Translocation Chr7 23772076 Chr1 6286048

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Homo	INTERGENIC
SBS	Chr1	13398353	C-T	Hetero	INTERGENIC
SBS	Chr2	19197994	G-T	Homo	UTR_5_PRIME
SBS	Chr2	21531599	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g208200
SBS	Chr2	30396590	A-G	Hetero	INTERGENIC
SBS	Chr3	497376	C-T	Homo	INTERGENIC
SBS	Chr3	543149	A-T	Hetero	INTERGENIC
SBS	Chr3	22220363	C-T	Homo	INTERGENIC
SBS	Chr3	25968138	C-T	Hetero	INTERGENIC
SBS	Chr4	5842817	A-C	Hetero	INTERGENIC
SBS	Chr4	6738033	T-A	Hetero	INTERGENIC
SBS	Chr4	15752760	G-A	Hetero	INTERGENIC
SBS	Chr4	21871606	A-G	Homo	INTERGENIC
SBS	Chr4	21871612	T-G	Homo	INTERGENIC
SBS	Chr4	22934238	A-C	Hetero	INTERGENIC
SBS	Chr4	31099612	T-A	Hetero	INTERGENIC
SBS	Chr5	9197939	G-A	Homo	INTERGENIC
SBS	Chr5	13670253	A-C	Homo	INTERGENIC
SBS	Chr6	3860573	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	13277738	C-T	Homo	INTERGENIC
SBS	Chr6	24887724	A-T	Hetero	INTERGENIC
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	4555351	T-C	Hetero	INTERGENIC
SBS	Chr7	5096728	G-C	Hetero	INTERGENIC
SBS	Chr7	5142591	C-T	Hetero	INTERGENIC
SBS	Chr7	8481612	G-T	Hetero	INTERGENIC
SBS	Chr7	10493148	C-A	Hetero	INTERGENIC
SBS	Chr7	14134591	G-T	Hetero	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr8	13995283	G-A	Homo	INTERGENIC
SBS	Chr9	15711162	T-C	Hetero	INTERGENIC
SBS	Chr9	20680787	A-G	Hetero	INTERGENIC
SBS	Chr10	3813154	C-T	Hetero	INTERGENIC
SBS	Chr10	13665896	G-A	Hetero	INTERGENIC
SBS	Chr10	15037705	A-T	Hetero	INTERGENIC
SBS	Chr10	21108630	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	21108631	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g163800
SBS	Chr11	3719824	T-A	Hetero	INTERGENIC
SBS	Chr11	9774973	T-A	Hetero	INTERGENIC
SBS	Chr11	19192117	A-T	Hetero	INTERGENIC
SBS	Chr11	19192118	T-A	Hetero	INTERGENIC
SBS	Chr11	21692209	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	4291711	4291713	2
Deletion	Chr10	5586001	5667000	80999	8
Deletion	Chr4	5631113	5631116	3
Deletion	Chr2	8839246	8839248	2
Deletion	Chr4	10335753	10335754	1
Deletion	Chr6	10636524	10636624	100	OsKitaake06g119501
Deletion	Chr5	10928001	10937000	8999
Deletion	Chr8	11376606	11376607	1
Deletion	Chr12	12843663	12843666	3
Deletion	Chr6	13549783	13549788	5
Deletion	Chr11	13806342	13806351	9
Deletion	Chr12	14308632	14308644	12
Deletion	Chr1	15229229	15229231	2
Deletion	Chr1	15965846	15965851	5
Deletion	Chr1	18014635	18014720	85
Deletion	Chr2	25009685	25009767	82
Deletion	Chr7	26500560	26500561	1	OsKitaake07g244800

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	23772071	Chr1	6288491
Translocation	Chr7	23772076	Chr1	6286048

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes