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| Mutant Information |
|---|
| Mutant Name | FN514-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN514-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14987478 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29235396 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g284900 |
| SBS | Chr2 | 30566854 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g312200 |
| SBS | Chr2 | 30566855 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g312200 |
| SBS | Chr3 | 22616293 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 27802479 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 32491751 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 1782026 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g011800 |
| SBS | Chr4 | 11565428 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 11762173 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14703448 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 18556444 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 25283595 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 30536275 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 3702305 | G-T | Hetero | START_GAINED | |
| SBS | Chr7 | 18106203 | G-A | Homo | INTRON | |
| SBS | Chr7 | 29597296 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 18114544 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 3771303 | C-G | Hetero | INTRON | |
| SBS | Chr9 | 5975303 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 4345207 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 8766019 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 6285175 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 7369585 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 11503379 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 12137427 | A-C | Hetero | INTRON | |
| SBS | Chr12 | 3862542 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 12308926 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 12971803 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15574644 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26746667 | G-A | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 3105751 | 3105754 | 3 | |
| Deletion | Chr11 | 6167510 | 6167511 | 1 | |
| Deletion | Chr8 | 6893883 | 6893884 | 1 | |
| Deletion | Chr11 | 8261921 | 8261923 | 2 | |
| Deletion | Chr1 | 8280945 | 8280946 | 1 | |
| Deletion | Chr6 | 15264406 | 15264407 | 1 | |
| Deletion | Chr10 | 16233416 | 16233418 | 2 | |
| Deletion | Chr1 | 17283622 | 17284286 | 664 | |
| Deletion | Chr11 | 21045904 | 21045910 | 6 | |
| Deletion | Chr7 | 26424919 | 26424921 | 2 | |
| Deletion | Chr2 | 26539847 | 26539848 | 1 | OsKitaake02g265300 |
| Deletion | Chr6 | 30546972 | 30546973 | 1 | OsKitaake06g287600 |
| Deletion | Chr2 | 30569167 | 30569168 | 1 | |
| Deletion | Chr4 | 36761517 | 36761519 | 2 | |
| Deletion | Chr1 | 43116127 | 43116128 | 1 |
Insertions: 5