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| Mutant Information |
|---|
| Mutant Name | FN515-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN515-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15352309 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 23516565 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29677244 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 42410670 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 28518510 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 5949162 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 5949167 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 5949175 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 14830666 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 15560090 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 5005512 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 10851504 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 638217 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 8572575 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 25539999 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10741203 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 22410496 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 8311668 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 2294670 | A-G | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 2293908 | 2293914 | 6 | |
| Deletion | Chr7 | 2847389 | 2847397 | 8 | |
| Deletion | Chr5 | 10543859 | 10543860 | 1 | |
| Deletion | Chr7 | 11747258 | 11747260 | 2 | |
| Deletion | Chr7 | 11984659 | 11984660 | 1 | |
| Deletion | Chr7 | 14721290 | 14721295 | 5 | |
| Deletion | Chr7 | 15376904 | 15376911 | 7 | |
| Deletion | Chr6 | 19616998 | 19617007 | 9 | |
| Deletion | Chr12 | 21417808 | 21417809 | 1 | |
| Deletion | Chr8 | 22155881 | 22155882 | 1 | |
| Deletion | Chr11 | 24450410 | 24450418 | 8 | |
| Deletion | Chr7 | 25485322 | 25485325 | 3 | |
| Deletion | Chr1 | 31482133 | 31482211 | 78 | OsKitaake01g316000 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 19697675 | 19697678 | 2 | |
| Insertion | Chr4 | 1061702 | 1061705 | 2 | |
| Insertion | Chr7 | 17400373 | 17400376 | 2 | |
| Insertion | Chr8 | 24469783 | 24469786 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 928018 | 1344524 | OsKitaake06g010200 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 373035 | Chr11 | 214194 | |
| Translocation | Chr5 | 8859642 | Chr1 | 10981108 | OsKitaake05g083700 |
| Translocation | Chr5 | 8860139 | Chr1 | 10981325 | OsKitaake05g083700 |