Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN516-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN516-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20156553 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 38223366 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 42088927 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 42088928 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 10880476 | C-G | Hetero | INTRON | |
| SBS | Chr2 | 23495682 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 24881801 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 35793077 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7074317 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 21067946 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 25666743 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 28658575 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 2570427 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 7811272 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 17934290 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 15716840 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 22239984 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 22462361 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 649372 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 2582594 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 12190404 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 17002704 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 25896222 | G-A | Homo | INTRON |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 5911929 | 5911939 | 10 | |
| Deletion | Chr3 | 6998640 | 6998643 | 3 | |
| Deletion | Chr1 | 8721721 | 8721723 | 2 | |
| Deletion | Chr12 | 11716620 | 11716785 | 165 | |
| Deletion | Chr12 | 14092974 | 14092975 | 1 | |
| Deletion | Chr5 | 22199906 | 22199914 | 8 | |
| Deletion | Chr4 | 22591001 | 22600000 | 8999 | 3 |
| Deletion | Chr12 | 24524103 | 24524104 | 1 | |
| Deletion | Chr3 | 24594001 | 24933000 | 338999 | 20 |
| Deletion | Chr8 | 25386765 | 25386778 | 13 | |
| Deletion | Chr8 | 26371354 | 26371358 | 4 | |
| Deletion | Chr12 | 27023519 | 27023840 | 321 | |
| Deletion | Chr6 | 29184346 | 29184358 | 12 | OsKitaake06g269800 |
| Deletion | Chr1 | 33869160 | 33869167 | 7 | |
| Deletion | Chr1 | 38702015 | 38702016 | 1 | OsKitaake01g413900 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 8647302 | 8647305 | 2 | |
| Insertion | Chr4 | 18215924 | 18215926 | 1 | |
| Insertion | Chr5 | 9944344 | 9944346 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 3984324 | 4253059 | |
| Inversion | Chr5 | 3984334 | 4253063 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 25751845 | Chr2 | 19908831 | |
| Translocation | Chr7 | 25753615 | Chr2 | 19908166 | 2 |