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Mutant Information

Mutant Name	FN517-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN517-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 39183280 G-A Homo INTERGENIC
SBS Chr2 24705796 A-G Homo INTERGENIC
SBS Chr2 28688859 A-G Homo INTRON
SBS Chr2 31234870 C-A Hetero INTERGENIC
SBS Chr3 4592997 C-T Homo INTERGENIC
SBS Chr3 10995433 G-A Hetero INTRON
SBS Chr3 17447972 A-T Homo INTERGENIC
SBS Chr4 1433322 G-A Hetero INTERGENIC
SBS Chr4 13935834 G-A Homo INTERGENIC
SBS Chr4 22297371 T-A Homo SPLICE_SITE_DONOR OsKitaake04g129975
SBS Chr4 23055377 T-A Homo INTERGENIC
SBS Chr4 26849115 A-G Homo INTERGENIC
SBS Chr5 3287037 C-T Hetero INTERGENIC
SBS Chr5 25902698 T-A Hetero INTERGENIC
SBS Chr6 1801857 G-A Hetero INTRON
SBS Chr6 5888312 G-A Homo INTERGENIC
SBS Chr6 15150772 G-A Homo INTERGENIC
SBS Chr7 16427616 G-T Homo INTERGENIC
SBS Chr7 29061808 A-G Hetero INTRON
SBS Chr8 9714821 C-G Hetero INTERGENIC
SBS Chr8 11034291 C-T Hetero INTERGENIC
SBS Chr9 1680592 C-T Hetero INTERGENIC
SBS Chr9 15686929 T-C Hetero INTRON
SBS Chr9 17005731 G-A Hetero INTERGENIC
SBS Chr9 18028221 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 9900878 G-T Hetero INTERGENIC
SBS Chr10 17920268 G-A Hetero INTERGENIC
SBS Chr11 4300411 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g057700
SBS Chr11 16438698 T-A Homo INTERGENIC
SBS Chr12 9199069 T-A Hetero INTERGENIC
SBS Chr12 22082684 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 171001 340000 168999 25
Deletion Chr11 1581912 1581914 2
Deletion Chr11 7174257 7174263 6
Deletion Chr4 9882054 9882055 1
Deletion Chr4 11328639 11328647 8
Deletion Chr9 12082001 12187000 104999 10
Deletion Chr11 15713996 15714000 4
Deletion Chr10 15762366 15762454 88
Deletion Chr9 16297001 16305000 7999
Deletion Chr6 30852335 30852336 1
Deletion Chr3 34404457 34404458 1
Deletion Chr1 36753001 36779000 25999 2
Deletion Chr1 36829238 36829246 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 29598902 29598905 2
Insertion Chr8 11486230 11486233 2
Insertion Chr12 10596599 10596602 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 867594 952754 OsKitaake09g005500
Inversion Chr8 10310606 10385841 OsKitaake08g093500
Inversion Chr8 10310610 10385851 OsKitaake08g093500
Inversion Chr9 16465108 16765748 OsKitaake09g124300
Inversion Chr9 16465131 16766574 OsKitaake09g124300

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 4306041 Chr9 16765758 OsKitaake09g124300
Translocation Chr9 12185260 Chr1 36776823
Translocation Chr10 18994925 Chr1 36777636
Translocation Chr10 18994936 Chr9 12184399
Translocation Chr2 35406148 Chr1 37680461 OsKitaake02g371400
Translocation Chr2 35406151 Chr1 37683417 OsKitaake02g371400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39183280	G-A	Homo	INTERGENIC
SBS	Chr2	24705796	A-G	Homo	INTERGENIC
SBS	Chr2	28688859	A-G	Homo	INTRON
SBS	Chr2	31234870	C-A	Hetero	INTERGENIC
SBS	Chr3	4592997	C-T	Homo	INTERGENIC
SBS	Chr3	10995433	G-A	Hetero	INTRON
SBS	Chr3	17447972	A-T	Homo	INTERGENIC
SBS	Chr4	1433322	G-A	Hetero	INTERGENIC
SBS	Chr4	13935834	G-A	Homo	INTERGENIC
SBS	Chr4	22297371	T-A	Homo	SPLICE_SITE_DONOR	OsKitaake04g129975
SBS	Chr4	23055377	T-A	Homo	INTERGENIC
SBS	Chr4	26849115	A-G	Homo	INTERGENIC
SBS	Chr5	3287037	C-T	Hetero	INTERGENIC
SBS	Chr5	25902698	T-A	Hetero	INTERGENIC
SBS	Chr6	1801857	G-A	Hetero	INTRON
SBS	Chr6	5888312	G-A	Homo	INTERGENIC
SBS	Chr6	15150772	G-A	Homo	INTERGENIC
SBS	Chr7	16427616	G-T	Homo	INTERGENIC
SBS	Chr7	29061808	A-G	Hetero	INTRON
SBS	Chr8	9714821	C-G	Hetero	INTERGENIC
SBS	Chr8	11034291	C-T	Hetero	INTERGENIC
SBS	Chr9	1680592	C-T	Hetero	INTERGENIC
SBS	Chr9	15686929	T-C	Hetero	INTRON
SBS	Chr9	17005731	G-A	Hetero	INTERGENIC
SBS	Chr9	18028221	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	9900878	G-T	Hetero	INTERGENIC
SBS	Chr10	17920268	G-A	Hetero	INTERGENIC
SBS	Chr11	4300411	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g057700
SBS	Chr11	16438698	T-A	Homo	INTERGENIC
SBS	Chr12	9199069	T-A	Hetero	INTERGENIC
SBS	Chr12	22082684	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	171001	340000	168999	25
Deletion	Chr11	1581912	1581914	2
Deletion	Chr11	7174257	7174263	6
Deletion	Chr4	9882054	9882055	1
Deletion	Chr4	11328639	11328647	8
Deletion	Chr9	12082001	12187000	104999	10
Deletion	Chr11	15713996	15714000	4
Deletion	Chr10	15762366	15762454	88
Deletion	Chr9	16297001	16305000	7999
Deletion	Chr6	30852335	30852336	1
Deletion	Chr3	34404457	34404458	1
Deletion	Chr1	36753001	36779000	25999	2
Deletion	Chr1	36829238	36829246	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	867594	952754	OsKitaake09g005500
Inversion	Chr8	10310606	10385841	OsKitaake08g093500
Inversion	Chr8	10310610	10385851	OsKitaake08g093500
Inversion	Chr9	16465108	16765748	OsKitaake09g124300
Inversion	Chr9	16465131	16766574	OsKitaake09g124300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes