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Mutant Information

Mutant Name	FN518-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN518-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4147073 A-G Homo UTR_5_PRIME
SBS Chr1 7480855 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g093700
SBS Chr1 12774118 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g152400
SBS Chr1 12774121 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g152400
SBS Chr1 33493080 G-T Homo UTR_5_PRIME
SBS Chr2 21579211 T-C Hetero INTRON
SBS Chr2 29153853 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g293500
SBS Chr3 1260174 A-T Hetero INTRON
SBS Chr3 22435186 G-A Hetero INTERGENIC
SBS Chr3 27950662 C-T Hetero INTERGENIC
SBS Chr3 29373132 A-G Hetero INTERGENIC
SBS Chr3 32372434 A-T Hetero INTERGENIC
SBS Chr4 18441728 G-T Hetero INTERGENIC
SBS Chr4 26637002 A-G Hetero SYNONYMOUS_CODING
SBS Chr5 8900317 C-T Hetero UTR_5_PRIME
SBS Chr5 13021065 T-C Hetero INTERGENIC
SBS Chr5 14093673 A-G Hetero INTERGENIC
SBS Chr5 28679554 T-C Hetero INTERGENIC
SBS Chr6 13123478 G-A Homo INTERGENIC
SBS Chr6 18806565 C-T Homo INTERGENIC
SBS Chr6 20084729 A-C Homo INTERGENIC
SBS Chr6 26990250 T-A Homo INTERGENIC
SBS Chr7 1632509 T-A Hetero UTR_3_PRIME
SBS Chr9 5462528 G-A Hetero INTERGENIC
SBS Chr9 5462529 G-A Hetero INTERGENIC
SBS Chr10 2552561 C-T Hetero INTERGENIC
SBS Chr12 22896650 C-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1558001 1620000 61999 9
Deletion Chr1 5228933 5228936 3
Deletion Chr4 13192567 13192569 2
Deletion Chr11 17509775 17509786 11
Deletion Chr3 18227200 18227201 1 OsKitaake03g222200
Deletion Chr7 22666599 22666600 1
Deletion Chr6 26602728 26602735 7
Deletion Chr4 33669529 33669531 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 15074681 15074684 2
Insertion Chr5 9040468 9040471 2
Insertion Chr7 19376976 19376979 2
Insertion Chr11 20034084 20034087 2
Insertion Chr9 8005391 8005393 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 1386086 1435930 2
Inversion Chr12 1386849 1435939 2
Inversion Chr2 2466108 2554545 OsKitaake02g036200
Inversion Chr2 2466110 2554548 OsKitaake02g036200
Inversion Chr5 27804455 27889144
Inversion Chr5 27804466 27889210

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4147073	A-G	Homo	UTR_5_PRIME
SBS	Chr1	7480855	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g093700
SBS	Chr1	12774118	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g152400
SBS	Chr1	12774121	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g152400
SBS	Chr1	33493080	G-T	Homo	UTR_5_PRIME
SBS	Chr2	21579211	T-C	Hetero	INTRON
SBS	Chr2	29153853	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g293500
SBS	Chr3	1260174	A-T	Hetero	INTRON
SBS	Chr3	22435186	G-A	Hetero	INTERGENIC
SBS	Chr3	27950662	C-T	Hetero	INTERGENIC
SBS	Chr3	29373132	A-G	Hetero	INTERGENIC
SBS	Chr3	32372434	A-T	Hetero	INTERGENIC
SBS	Chr4	18441728	G-T	Hetero	INTERGENIC
SBS	Chr4	26637002	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr5	8900317	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	13021065	T-C	Hetero	INTERGENIC
SBS	Chr5	14093673	A-G	Hetero	INTERGENIC
SBS	Chr5	28679554	T-C	Hetero	INTERGENIC
SBS	Chr6	13123478	G-A	Homo	INTERGENIC
SBS	Chr6	18806565	C-T	Homo	INTERGENIC
SBS	Chr6	20084729	A-C	Homo	INTERGENIC
SBS	Chr6	26990250	T-A	Homo	INTERGENIC
SBS	Chr7	1632509	T-A	Hetero	UTR_3_PRIME
SBS	Chr9	5462528	G-A	Hetero	INTERGENIC
SBS	Chr9	5462529	G-A	Hetero	INTERGENIC
SBS	Chr10	2552561	C-T	Hetero	INTERGENIC
SBS	Chr12	22896650	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1558001	1620000	61999	9
Deletion	Chr1	5228933	5228936	3
Deletion	Chr4	13192567	13192569	2
Deletion	Chr11	17509775	17509786	11
Deletion	Chr3	18227200	18227201	1	OsKitaake03g222200
Deletion	Chr7	22666599	22666600	1
Deletion	Chr6	26602728	26602735	7
Deletion	Chr4	33669529	33669531	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1386086	1435930	2
Inversion	Chr12	1386849	1435939	2
Inversion	Chr2	2466108	2554545	OsKitaake02g036200
Inversion	Chr2	2466110	2554548	OsKitaake02g036200
Inversion	Chr5	27804455	27889144
Inversion	Chr5	27804466	27889210

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes