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Mutant Information

Mutant Name	FN519-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN519-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4512186 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g060100
SBS Chr1 7339348 G-A Hetero INTERGENIC
SBS Chr1 24056866 A-G Hetero INTRON
SBS Chr3 23017954 G-A Hetero UTR_5_PRIME
SBS Chr3 25717191 C-T Homo INTERGENIC
SBS Chr3 37084929 T-C Hetero INTERGENIC
SBS Chr4 20358180 A-T Hetero INTERGENIC
SBS Chr4 22408371 T-C Hetero INTERGENIC
SBS Chr4 28136506 T-A Hetero INTERGENIC
SBS Chr5 5452582 G-A Homo INTERGENIC
SBS Chr5 24008007 C-A Hetero INTERGENIC
SBS Chr5 26596384 G-T Hetero INTERGENIC
SBS Chr6 8549229 T-G Hetero INTERGENIC
SBS Chr7 11241872 G-A Hetero INTERGENIC
SBS Chr8 17247536 G-A Hetero INTERGENIC
SBS Chr8 20854266 C-T Hetero INTERGENIC
SBS Chr9 5991313 C-T Hetero INTERGENIC
SBS Chr9 16566120 C-T Homo INTERGENIC
SBS Chr10 21906843 T-C Hetero INTRON
SBS Chr11 7080812 C-T Hetero INTERGENIC
SBS Chr11 7101168 T-C Hetero INTERGENIC
SBS Chr11 10444981 C-T Hetero INTERGENIC
SBS Chr11 10833573 G-T Homo INTERGENIC
SBS Chr11 14693782 C-T Homo INTERGENIC
SBS Chr12 1510354 G-A Hetero INTERGENIC
SBS Chr12 19909604 A-G Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1081212 1081213 1
Deletion Chr5 2024478 2024479 1
Deletion Chr10 2242697 2242702 5
Deletion Chr12 6311507 6311509 2
Deletion Chr1 20862240 20862246 6
Deletion Chr12 21941035 21941040 5
Deletion Chr7 28903868 28903872 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 25036464 25036472 7
Insertion Chr5 15427052 15427054 1 OsKitaake05g118300

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 12946936 12962423 OsKitaake02g144900
Inversion Chr2 12946942 12962427 OsKitaake02g144900
Inversion Chr5 27138384 28056015
Inversion Chr5 27138387 28056018

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4512186	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g060100
SBS	Chr1	7339348	G-A	Hetero	INTERGENIC
SBS	Chr1	24056866	A-G	Hetero	INTRON
SBS	Chr3	23017954	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	25717191	C-T	Homo	INTERGENIC
SBS	Chr3	37084929	T-C	Hetero	INTERGENIC
SBS	Chr4	20358180	A-T	Hetero	INTERGENIC
SBS	Chr4	22408371	T-C	Hetero	INTERGENIC
SBS	Chr4	28136506	T-A	Hetero	INTERGENIC
SBS	Chr5	5452582	G-A	Homo	INTERGENIC
SBS	Chr5	24008007	C-A	Hetero	INTERGENIC
SBS	Chr5	26596384	G-T	Hetero	INTERGENIC
SBS	Chr6	8549229	T-G	Hetero	INTERGENIC
SBS	Chr7	11241872	G-A	Hetero	INTERGENIC
SBS	Chr8	17247536	G-A	Hetero	INTERGENIC
SBS	Chr8	20854266	C-T	Hetero	INTERGENIC
SBS	Chr9	5991313	C-T	Hetero	INTERGENIC
SBS	Chr9	16566120	C-T	Homo	INTERGENIC
SBS	Chr10	21906843	T-C	Hetero	INTRON
SBS	Chr11	7080812	C-T	Hetero	INTERGENIC
SBS	Chr11	7101168	T-C	Hetero	INTERGENIC
SBS	Chr11	10444981	C-T	Hetero	INTERGENIC
SBS	Chr11	10833573	G-T	Homo	INTERGENIC
SBS	Chr11	14693782	C-T	Homo	INTERGENIC
SBS	Chr12	1510354	G-A	Hetero	INTERGENIC
SBS	Chr12	19909604	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1081212	1081213	1
Deletion	Chr5	2024478	2024479	1
Deletion	Chr10	2242697	2242702	5
Deletion	Chr12	6311507	6311509	2
Deletion	Chr1	20862240	20862246	6
Deletion	Chr12	21941035	21941040	5
Deletion	Chr7	28903868	28903872	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	12946936	12962423	OsKitaake02g144900
Inversion	Chr2	12946942	12962427	OsKitaake02g144900
Inversion	Chr5	27138384	28056015
Inversion	Chr5	27138387	28056018

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes