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Mutant Information

Mutant Name	FN520-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN520-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10108360 G-A Homo INTERGENIC
SBS Chr1 34009941 C-A Homo INTERGENIC
SBS Chr1 37811358 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g403700
SBS Chr2 3068718 A-T Hetero INTERGENIC
SBS Chr2 6560923 A-G Hetero INTERGENIC
SBS Chr3 26005936 G-A Hetero INTERGENIC
SBS Chr4 23054946 T-A Hetero INTERGENIC
SBS Chr4 23054947 C-A Hetero INTERGENIC
SBS Chr4 27449533 A-T Hetero INTERGENIC
SBS Chr5 130737 G-C Hetero INTERGENIC
SBS Chr5 13441878 A-T Homo INTERGENIC
SBS Chr5 15398121 G-A Homo INTERGENIC
SBS Chr5 25706990 A-T Hetero INTERGENIC
SBS Chr7 8122578 C-A Homo INTERGENIC
SBS Chr7 8684129 C-T Hetero INTERGENIC
SBS Chr8 2588650 A-T Hetero INTERGENIC
SBS Chr9 11929575 C-G Hetero INTERGENIC
SBS Chr9 20449355 T-A Hetero INTERGENIC
SBS Chr10 9101245 T-G Hetero INTERGENIC
SBS Chr12 10543298 G-A Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1601081 1601083 2
Deletion Chr9 3585917 3586098 181
Deletion Chr6 13028619 13028620 1
Deletion Chr10 16240633 16240634 1
Deletion Chr6 26742717 26742724 7
Deletion Chr3 27694001 27704000 9999 4
Deletion Chr3 29561350 29561352 2
Deletion Chr3 35424372 35424373 1
Deletion Chr1 36359643 36359650 7

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4499896 4499899 2
Insertion Chr3 16158871 16158873 1
Insertion Chr5 19459239 19459243 3
Insertion Chr6 24846096 24846099 2
Insertion Chr12 3353407 3353410 2
Insertion Chr1 6413509 6413512 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 9109004 9146189 OsKitaake03g124800
Inversion Chr3 9109007 9146187 OsKitaake03g124800
Inversion Chr4 27348434 27466073 OsKitaake04g199100
Inversion Chr4 27348449 27466085 OsKitaake04g199100
Inversion Chr11 27997946 28458411
Inversion Chr11 27997952 28458419

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10108360	G-A	Homo	INTERGENIC
SBS	Chr1	34009941	C-A	Homo	INTERGENIC
SBS	Chr1	37811358	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g403700
SBS	Chr2	3068718	A-T	Hetero	INTERGENIC
SBS	Chr2	6560923	A-G	Hetero	INTERGENIC
SBS	Chr3	26005936	G-A	Hetero	INTERGENIC
SBS	Chr4	23054946	T-A	Hetero	INTERGENIC
SBS	Chr4	23054947	C-A	Hetero	INTERGENIC
SBS	Chr4	27449533	A-T	Hetero	INTERGENIC
SBS	Chr5	130737	G-C	Hetero	INTERGENIC
SBS	Chr5	13441878	A-T	Homo	INTERGENIC
SBS	Chr5	15398121	G-A	Homo	INTERGENIC
SBS	Chr5	25706990	A-T	Hetero	INTERGENIC
SBS	Chr7	8122578	C-A	Homo	INTERGENIC
SBS	Chr7	8684129	C-T	Hetero	INTERGENIC
SBS	Chr8	2588650	A-T	Hetero	INTERGENIC
SBS	Chr9	11929575	C-G	Hetero	INTERGENIC
SBS	Chr9	20449355	T-A	Hetero	INTERGENIC
SBS	Chr10	9101245	T-G	Hetero	INTERGENIC
SBS	Chr12	10543298	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1601081	1601083	2
Deletion	Chr9	3585917	3586098	181
Deletion	Chr6	13028619	13028620	1
Deletion	Chr10	16240633	16240634	1
Deletion	Chr6	26742717	26742724	7
Deletion	Chr3	27694001	27704000	9999	4
Deletion	Chr3	29561350	29561352	2
Deletion	Chr3	35424372	35424373	1
Deletion	Chr1	36359643	36359650	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	9109004	9146189	OsKitaake03g124800
Inversion	Chr3	9109007	9146187	OsKitaake03g124800
Inversion	Chr4	27348434	27466073	OsKitaake04g199100
Inversion	Chr4	27348449	27466085	OsKitaake04g199100
Inversion	Chr11	27997946	28458411
Inversion	Chr11	27997952	28458419

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes