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Mutant Information

Mutant Name	FN521-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN521-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15347067 C-T Hetero INTERGENIC
SBS Chr1 21175640 T-G Hetero INTERGENIC
SBS Chr1 25745242 C-T Hetero INTERGENIC
SBS Chr1 25745243 A-T Hetero INTERGENIC
SBS Chr1 35415821 T-C Hetero INTERGENIC
SBS Chr1 37334845 T-C Hetero SYNONYMOUS_CODING
SBS Chr1 42453029 T-C Homo UTR_5_PRIME
SBS Chr2 18110277 C-T Hetero INTERGENIC
SBS Chr2 19961333 A-T Hetero INTRON
SBS Chr2 29487667 A-T Hetero INTRON
SBS Chr2 30740029 G-T Hetero INTERGENIC
SBS Chr3 16166441 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g206100
SBS Chr3 34099019 G-A Hetero INTERGENIC
SBS Chr4 7612017 G-A Hetero UTR_5_PRIME
SBS Chr4 11240223 C-T Homo INTERGENIC
SBS Chr4 13778712 C-A Hetero INTERGENIC
SBS Chr4 14764183 G-A Hetero INTERGENIC
SBS Chr5 2034037 A-T Hetero INTERGENIC
SBS Chr5 6178152 G-A Hetero INTERGENIC
SBS Chr5 7076681 G-C Hetero INTERGENIC
SBS Chr5 15735229 A-T Hetero INTERGENIC
SBS Chr5 15735230 G-C Hetero INTERGENIC
SBS Chr5 20384213 A-T Hetero INTERGENIC
SBS Chr6 409663 A-G Homo INTERGENIC
SBS Chr6 409668 A-T Homo INTERGENIC
SBS Chr6 5473772 G-A Homo INTERGENIC
SBS Chr6 5473773 T-A Homo INTERGENIC
SBS Chr6 24936934 C-T Homo INTERGENIC
SBS Chr7 789447 A-T Homo INTERGENIC
SBS Chr7 6533843 T-G Homo INTERGENIC
SBS Chr7 12312404 G-A Homo INTERGENIC
SBS Chr7 16187938 T-A Homo INTERGENIC
SBS Chr8 18670288 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g138100
SBS Chr8 18670289 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g138100
SBS Chr8 20158141 G-A Hetero INTRON
SBS Chr9 21312754 C-T Homo INTRON
SBS Chr11 11934741 C-T Hetero INTERGENIC
SBS Chr11 13731235 G-A Hetero INTERGENIC
SBS Chr11 14994038 G-A Homo INTERGENIC
SBS Chr11 24848899 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g202100
SBS Chr12 1384951 G-A Hetero UTR_3_PRIME
SBS Chr12 7241034 G-A Hetero INTERGENIC
SBS Chr12 19284165 G-A Hetero INTERGENIC
SBS Chr12 19965529 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3225967 3225968 1
Deletion Chr9 4003441 4003450 9
Deletion Chr8 4742144 4742149 5
Deletion Chr9 5149618 5149619 1
Deletion Chr6 5471996 5472001 5
Deletion Chr3 6280035 6280155 120
Deletion Chr5 10304566 10304567 1
Deletion Chr7 11263645 11263646 1
Deletion Chr6 11730455 11730468 13
Deletion Chr7 15152001 15218000 65999 6
Deletion Chr7 16187750 16187752 2
Deletion Chr12 26505219 26505221 2
Deletion Chr7 27142691 27142692 1
Deletion Chr6 27418259 27418260 1
Deletion Chr6 28044765 28044766 1
Deletion Chr4 28155543 28155544 1
Deletion Chr2 33108988 33108994 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 32831753 32831756 2
Insertion Chr2 13851980 13851983 2
Insertion Chr4 23355941 23355944 2
Insertion Chr9 14214754 14214757 2
Insertion Chr12 15941367 15941369 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 986741 Chr11 9738125 2
Translocation Chr12 1455432 Chr11 21300693
Translocation Chr12 2687501 Chr11 9738121 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15347067	C-T	Hetero	INTERGENIC
SBS	Chr1	21175640	T-G	Hetero	INTERGENIC
SBS	Chr1	25745242	C-T	Hetero	INTERGENIC
SBS	Chr1	25745243	A-T	Hetero	INTERGENIC
SBS	Chr1	35415821	T-C	Hetero	INTERGENIC
SBS	Chr1	37334845	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	42453029	T-C	Homo	UTR_5_PRIME
SBS	Chr2	18110277	C-T	Hetero	INTERGENIC
SBS	Chr2	19961333	A-T	Hetero	INTRON
SBS	Chr2	29487667	A-T	Hetero	INTRON
SBS	Chr2	30740029	G-T	Hetero	INTERGENIC
SBS	Chr3	16166441	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g206100
SBS	Chr3	34099019	G-A	Hetero	INTERGENIC
SBS	Chr4	7612017	G-A	Hetero	UTR_5_PRIME
SBS	Chr4	11240223	C-T	Homo	INTERGENIC
SBS	Chr4	13778712	C-A	Hetero	INTERGENIC
SBS	Chr4	14764183	G-A	Hetero	INTERGENIC
SBS	Chr5	2034037	A-T	Hetero	INTERGENIC
SBS	Chr5	6178152	G-A	Hetero	INTERGENIC
SBS	Chr5	7076681	G-C	Hetero	INTERGENIC
SBS	Chr5	15735229	A-T	Hetero	INTERGENIC
SBS	Chr5	15735230	G-C	Hetero	INTERGENIC
SBS	Chr5	20384213	A-T	Hetero	INTERGENIC
SBS	Chr6	409663	A-G	Homo	INTERGENIC
SBS	Chr6	409668	A-T	Homo	INTERGENIC
SBS	Chr6	5473772	G-A	Homo	INTERGENIC
SBS	Chr6	5473773	T-A	Homo	INTERGENIC
SBS	Chr6	24936934	C-T	Homo	INTERGENIC
SBS	Chr7	789447	A-T	Homo	INTERGENIC
SBS	Chr7	6533843	T-G	Homo	INTERGENIC
SBS	Chr7	12312404	G-A	Homo	INTERGENIC
SBS	Chr7	16187938	T-A	Homo	INTERGENIC
SBS	Chr8	18670288	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g138100
SBS	Chr8	18670289	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g138100
SBS	Chr8	20158141	G-A	Hetero	INTRON
SBS	Chr9	21312754	C-T	Homo	INTRON
SBS	Chr11	11934741	C-T	Hetero	INTERGENIC
SBS	Chr11	13731235	G-A	Hetero	INTERGENIC
SBS	Chr11	14994038	G-A	Homo	INTERGENIC
SBS	Chr11	24848899	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g202100
SBS	Chr12	1384951	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	7241034	G-A	Hetero	INTERGENIC
SBS	Chr12	19284165	G-A	Hetero	INTERGENIC
SBS	Chr12	19965529	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3225967	3225968	1
Deletion	Chr9	4003441	4003450	9
Deletion	Chr8	4742144	4742149	5
Deletion	Chr9	5149618	5149619	1
Deletion	Chr6	5471996	5472001	5
Deletion	Chr3	6280035	6280155	120
Deletion	Chr5	10304566	10304567	1
Deletion	Chr7	11263645	11263646	1
Deletion	Chr6	11730455	11730468	13
Deletion	Chr7	15152001	15218000	65999	6
Deletion	Chr7	16187750	16187752	2
Deletion	Chr12	26505219	26505221	2
Deletion	Chr7	27142691	27142692	1
Deletion	Chr6	27418259	27418260	1
Deletion	Chr6	28044765	28044766	1
Deletion	Chr4	28155543	28155544	1
Deletion	Chr2	33108988	33108994	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	986741	Chr11	9738125	2
Translocation	Chr12	1455432	Chr11	21300693
Translocation	Chr12	2687501	Chr11	9738121	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes