Search Kitaake

Mutant Information

Mutant Name	FN522-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN522-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12940096 G-A Homo INTRON
SBS Chr1 18503855 C-T Hetero INTERGENIC
SBS Chr1 33237772 A-G Hetero INTERGENIC
SBS Chr2 3830507 C-G Homo INTERGENIC
SBS Chr2 3830514 A-T Homo INTERGENIC
SBS Chr2 8456714 G-T Hetero INTERGENIC
SBS Chr2 8456715 A-T Hetero INTERGENIC
SBS Chr2 9567077 T-A Hetero UTR_5_PRIME
SBS Chr2 17243140 G-A Hetero INTERGENIC
SBS Chr2 18301443 G-C Homo INTRON
SBS Chr2 26745333 A-C Homo INTERGENIC
SBS Chr2 34262301 G-T Hetero UTR_5_PRIME
SBS Chr3 380776 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 2211236 T-C Hetero INTRON
SBS Chr3 5907699 C-T Hetero INTRON
SBS Chr3 13381500 G-T Hetero UTR_3_PRIME
SBS Chr4 4172916 C-T Hetero INTERGENIC
SBS Chr4 20473854 C-T Hetero INTRON
SBS Chr4 32738380 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 19076024 T-C Hetero INTERGENIC
SBS Chr6 8811998 T-G Homo INTERGENIC
SBS Chr6 17723078 G-A Hetero INTERGENIC
SBS Chr8 10857255 G-A Hetero INTERGENIC
SBS Chr8 19567160 C-T Homo INTERGENIC
SBS Chr8 26038612 G-A Homo NON_SYNONYMOUS_CODING OsKitaake08g206901
SBS Chr8 26038613 C-T Homo STOP_GAINED OsKitaake08g206901
SBS Chr9 11388592 C-T Homo INTERGENIC
SBS Chr9 11388594 G-T Homo INTERGENIC
SBS Chr10 5858026 C-T Homo INTERGENIC
SBS Chr10 10917615 A-G Hetero INTERGENIC
SBS Chr10 10918207 C-T Hetero INTERGENIC
SBS Chr11 7029607 G-T Hetero INTRON
SBS Chr11 7755171 C-A Hetero UTR_3_PRIME
SBS Chr11 13474996 A-G Hetero INTERGENIC
SBS Chr11 20495613 A-C Hetero INTERGENIC
SBS Chr11 25256357 C-T Hetero INTERGENIC
SBS Chr11 28030205 G-T Hetero INTERGENIC
SBS Chr12 7301305 C-T Hetero INTERGENIC
SBS Chr12 15804873 G-C Hetero INTERGENIC
SBS Chr12 18690000 T-A Hetero INTERGENIC
SBS Chr12 18690001 T-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 6563827 6563846 19
Deletion Chr5 6623001 6623010 9
Deletion Chr2 6658001 6743000 84999 12
Deletion Chr8 9942481 9942485 4
Deletion Chr8 16932321 16932326 5
Deletion Chr5 18068325 18068326 1
Deletion Chr5 18485345 18485356 11
Deletion Chr7 18608001 18911000 302999 20
Deletion Chr12 18692001 18847000 154999 8
Deletion Chr5 22791327 22791334 7
Deletion Chr4 26482001 26513000 30999 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 19362291 19362295 3
Insertion Chr3 27689455 27689459 3
Insertion Chr4 22491742 22491745 2
Insertion Chr9 4550837 4550840 2
Insertion Chr11 4030508 4030511 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 26437586 26539459

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 5187087 Chr2 16794899 OsKitaake03g074100
Translocation Chr12 11636955 Chr9 10688749
Translocation Chr12 23841378 Chr4 26482018
Translocation Chr4 26437666 Chr2 10879674 OsKitaake02g127300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12940096	G-A	Homo	INTRON
SBS	Chr1	18503855	C-T	Hetero	INTERGENIC
SBS	Chr1	33237772	A-G	Hetero	INTERGENIC
SBS	Chr2	3830507	C-G	Homo	INTERGENIC
SBS	Chr2	3830514	A-T	Homo	INTERGENIC
SBS	Chr2	8456714	G-T	Hetero	INTERGENIC
SBS	Chr2	8456715	A-T	Hetero	INTERGENIC
SBS	Chr2	9567077	T-A	Hetero	UTR_5_PRIME
SBS	Chr2	17243140	G-A	Hetero	INTERGENIC
SBS	Chr2	18301443	G-C	Homo	INTRON
SBS	Chr2	26745333	A-C	Homo	INTERGENIC
SBS	Chr2	34262301	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	380776	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	2211236	T-C	Hetero	INTRON
SBS	Chr3	5907699	C-T	Hetero	INTRON
SBS	Chr3	13381500	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	4172916	C-T	Hetero	INTERGENIC
SBS	Chr4	20473854	C-T	Hetero	INTRON
SBS	Chr4	32738380	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	19076024	T-C	Hetero	INTERGENIC
SBS	Chr6	8811998	T-G	Homo	INTERGENIC
SBS	Chr6	17723078	G-A	Hetero	INTERGENIC
SBS	Chr8	10857255	G-A	Hetero	INTERGENIC
SBS	Chr8	19567160	C-T	Homo	INTERGENIC
SBS	Chr8	26038612	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g206901
SBS	Chr8	26038613	C-T	Homo	STOP_GAINED	OsKitaake08g206901
SBS	Chr9	11388592	C-T	Homo	INTERGENIC
SBS	Chr9	11388594	G-T	Homo	INTERGENIC
SBS	Chr10	5858026	C-T	Homo	INTERGENIC
SBS	Chr10	10917615	A-G	Hetero	INTERGENIC
SBS	Chr10	10918207	C-T	Hetero	INTERGENIC
SBS	Chr11	7029607	G-T	Hetero	INTRON
SBS	Chr11	7755171	C-A	Hetero	UTR_3_PRIME
SBS	Chr11	13474996	A-G	Hetero	INTERGENIC
SBS	Chr11	20495613	A-C	Hetero	INTERGENIC
SBS	Chr11	25256357	C-T	Hetero	INTERGENIC
SBS	Chr11	28030205	G-T	Hetero	INTERGENIC
SBS	Chr12	7301305	C-T	Hetero	INTERGENIC
SBS	Chr12	15804873	G-C	Hetero	INTERGENIC
SBS	Chr12	18690000	T-A	Hetero	INTERGENIC
SBS	Chr12	18690001	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	6563827	6563846	19
Deletion	Chr5	6623001	6623010	9
Deletion	Chr2	6658001	6743000	84999	12
Deletion	Chr8	9942481	9942485	4
Deletion	Chr8	16932321	16932326	5
Deletion	Chr5	18068325	18068326	1
Deletion	Chr5	18485345	18485356	11
Deletion	Chr7	18608001	18911000	302999	20
Deletion	Chr12	18692001	18847000	154999	8
Deletion	Chr5	22791327	22791334	7
Deletion	Chr4	26482001	26513000	30999	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	26437586	26539459

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes