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Mutant Information

Mutant Name	FN523-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN523-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9408441 C-A Hetero INTRON
SBS Chr1 9408442 T-A Hetero INTRON
SBS Chr1 21157691 C-T Homo INTERGENIC
SBS Chr2 7569938 A-C Hetero INTERGENIC
SBS Chr2 30281943 A-G Hetero INTERGENIC
SBS Chr3 4893866 T-A Hetero INTERGENIC
SBS Chr3 25815762 T-C Hetero INTRON
SBS Chr3 31971557 A-T Hetero INTERGENIC
SBS Chr4 10645072 C-T Hetero INTERGENIC
SBS Chr4 31609703 C-T Hetero INTRON
SBS Chr5 21827591 A-C Homo INTERGENIC
SBS Chr5 21935100 G-A Homo INTERGENIC
SBS Chr6 8699026 C-A Hetero INTERGENIC
SBS Chr6 19246255 C-T Hetero UTR_5_PRIME
SBS Chr7 2449133 T-G Homo INTERGENIC
SBS Chr7 2897405 C-T Hetero INTERGENIC
SBS Chr7 19990795 G-A Hetero INTERGENIC
SBS Chr8 1645749 C-A Homo INTERGENIC
SBS Chr9 5698950 C-G Hetero INTERGENIC
SBS Chr11 4620308 G-A Hetero INTRON
SBS Chr11 15295156 C-T Homo INTERGENIC
SBS Chr11 28253413 G-T Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2466313 2466315 2
Deletion Chr1 8947129 8947130 1
Deletion Chr4 11721632 11721634 2
Deletion Chr6 13409040 13409044 4
Deletion Chr3 17358936 17359015 79
Deletion Chr5 21412450 21412457 7
Deletion Chr6 22041052 22041060 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 22688053 22688056 2
Insertion Chr1 9692959 9692961 1
Insertion Chr2 13856923 13856926 2
Insertion Chr4 26628398 26628400 1 OsKitaake04g191600

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 27525655 27568012

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 10376644 Chr5 21853351 OsKitaake05g178500
Translocation Chr6 10376647 Chr5 21855228 OsKitaake05g178500
Translocation Chr6 14802077 Chr5 10167922 OsKitaake06g149600
Translocation Chr6 14802079 Chr5 10164478 OsKitaake06g149600
Translocation Chr7 27833485 Chr6 5426469 OsKitaake07g260300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9408441	C-A	Hetero	INTRON
SBS	Chr1	9408442	T-A	Hetero	INTRON
SBS	Chr1	21157691	C-T	Homo	INTERGENIC
SBS	Chr2	7569938	A-C	Hetero	INTERGENIC
SBS	Chr2	30281943	A-G	Hetero	INTERGENIC
SBS	Chr3	4893866	T-A	Hetero	INTERGENIC
SBS	Chr3	25815762	T-C	Hetero	INTRON
SBS	Chr3	31971557	A-T	Hetero	INTERGENIC
SBS	Chr4	10645072	C-T	Hetero	INTERGENIC
SBS	Chr4	31609703	C-T	Hetero	INTRON
SBS	Chr5	21827591	A-C	Homo	INTERGENIC
SBS	Chr5	21935100	G-A	Homo	INTERGENIC
SBS	Chr6	8699026	C-A	Hetero	INTERGENIC
SBS	Chr6	19246255	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	2449133	T-G	Homo	INTERGENIC
SBS	Chr7	2897405	C-T	Hetero	INTERGENIC
SBS	Chr7	19990795	G-A	Hetero	INTERGENIC
SBS	Chr8	1645749	C-A	Homo	INTERGENIC
SBS	Chr9	5698950	C-G	Hetero	INTERGENIC
SBS	Chr11	4620308	G-A	Hetero	INTRON
SBS	Chr11	15295156	C-T	Homo	INTERGENIC
SBS	Chr11	28253413	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2466313	2466315	2
Deletion	Chr1	8947129	8947130	1
Deletion	Chr4	11721632	11721634	2
Deletion	Chr6	13409040	13409044	4
Deletion	Chr3	17358936	17359015	79
Deletion	Chr5	21412450	21412457	7
Deletion	Chr6	22041052	22041060	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	27525655	27568012

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes