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| Mutant Information |
|---|
| Mutant Name | FN524-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN524-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4868845 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 8168122 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 14585448 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 19582905 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 6976320 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 2768093 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 8148298 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 8733068 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 13393810 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15797818 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 625891 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 25187717 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 16090437 | C-G | Hetero | INTRON | |
| SBS | Chr8 | 19644799 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2026915 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16395594 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 5093998 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8872269 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 14842794 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 17356106 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 18814512 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 1007969 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 5135457 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8179054 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8555570 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12376654 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16184674 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24694608 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 28458311 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 1021582 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 5688834 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 6726409 | A-G | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 7106166 | 7106168 | 2 | |
| Deletion | Chr9 | 8489106 | 8489117 | 11 | |
| Deletion | Chr7 | 10484443 | 10484447 | 4 | |
| Deletion | Chr3 | 20155001 | 20400000 | 244999 | 4 |
| Deletion | Chr3 | 20408001 | 20420000 | 11999 | |
| Deletion | Chr3 | 20429001 | 20436000 | 6999 | |
| Deletion | Chr5 | 20826230 | 20826231 | 1 | |
| Deletion | Chr1 | 21661222 | 21661239 | 17 | OsKitaake01g208700 |
| Deletion | Chr8 | 22935649 | 22935650 | 1 | OsKitaake08g175600 |
| Deletion | Chr3 | 32564607 | 32564612 | 5 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 15675325 | 15675328 | 2 | |
| Insertion | Chr10 | 12633820 | 12633823 | 2 | |
| Insertion | Chr10 | 12762686 | 12762688 | 1 | OsKitaake10g077701  |
| Insertion | Chr12 | 19828679 | 19828682 | 2 | |
| Insertion | Chr5 | 16412157 | 16412161 | 3 | |
| Insertion | Chr5 | 30231639 | 30231641 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 13558446 | 13744704 | OsKitaake05g104800 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 26406726 | Chr7 | 26062894 | |
| Translocation | Chr11 | 26406729 | Chr7 | 26062768 |