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| Mutant Information |
|---|
| Mutant Name | FN526-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN526-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15179366 | A-T | Homo | INTRON | |
| SBS | Chr1 | 40901073 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g445900 |
| SBS | Chr1 | 40901076 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g445900 |
| SBS | Chr2 | 2180486 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 15826112 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 15826113 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 16148667 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 26967970 | A-G | Homo | INTRON | |
| SBS | Chr2 | 33226820 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 34254931 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 15702223 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 29203980 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 35755858 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 2780323 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 3342877 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 27837410 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 14061750 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16779014 | A-G | Hetero | INTRON | |
| SBS | Chr6 | 19562086 | T-G | Homo | INTERGENIC | |
| SBS | Chr6 | 24493178 | T-G | Hetero | INTRON | |
| SBS | Chr8 | 968213 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13416048 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 18202446 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 1748008 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 17878737 | G-A | Hetero | STOP_GAINED | OsKitaake10g124500 |
| SBS | Chr12 | 14310496 | T-C | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 9872009 | 9872020 | 11 | |
| Deletion | Chr10 | 12368548 | 12368549 | 1 | |
| Deletion | Chr12 | 13197736 | 13197742 | 6 | |
| Deletion | Chr12 | 13296330 | 13296331 | 1 | OsKitaake12g110600 |
| Deletion | Chr1 | 16945445 | 16945447 | 2 | |
| Deletion | Chr1 | 31975167 | 31975173 | 6 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 27121662 | 27121665 | 2 | |
| Insertion | Chr4 | 21176512 | 21176515 | 2 | |
| Insertion | Chr5 | 23342413 | 23342416 | 2 | |
| Insertion | Chr6 | 15742549 | 15742552 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 12214902 | 12910311 | 2 |
| Inversion | Chr8 | 12214995 | 12910314 | 2 |
| Inversion | Chr8 | 18683510 | 18745748 | OsKitaake08g138300 |
| Inversion | Chr8 | 18683514 | 18745756 | OsKitaake08g138300 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 12214902 | Chr2 | 28995838 | 2 |
| Translocation | Chr8 | 12910306 | Chr2 | 28995551 | OsKitaake08g108900 |