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Mutant Information

Mutant Name	FN527-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN527-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4264815 A-C Homo UTR_3_PRIME
SBS Chr1 12280128 C-T Homo INTERGENIC
SBS Chr1 17660252 A-G Hetero INTRON
SBS Chr1 17660253 C-A Hetero INTRON
SBS Chr1 36597775 G-A Hetero INTERGENIC
SBS Chr1 36686244 G-T Hetero UTR_5_PRIME
SBS Chr2 3689664 A-G Hetero INTRON
SBS Chr3 6931311 G-T Homo NON_SYNONYMOUS_CODING OsKitaake03g097700
SBS Chr3 30108693 G-C Hetero INTERGENIC
SBS Chr4 36403382 G-C Hetero INTRON
SBS Chr6 4585010 T-C Homo INTERGENIC
SBS Chr6 15082220 G-T Hetero INTERGENIC
SBS Chr6 28902600 G-A Hetero INTRON
SBS Chr6 29178996 G-A Hetero INTRON
SBS Chr6 29827060 T-C Hetero INTERGENIC
SBS Chr7 3745872 C-T Hetero INTERGENIC
SBS Chr8 7402948 G-A Hetero INTERGENIC
SBS Chr8 11598880 G-A Hetero INTERGENIC
SBS Chr8 13768486 C-A Hetero INTERGENIC
SBS Chr8 20910702 A-G Hetero INTRON
SBS Chr9 16168808 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g116200
SBS Chr9 16215068 G-T Hetero INTERGENIC
SBS Chr10 18813944 T-A Hetero INTERGENIC
SBS Chr10 19399483 A-G Hetero INTERGENIC
SBS Chr10 22780214 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 20569975 A-C Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1093764 1093771 7
Deletion Chr2 1464873 1464874 1
Deletion Chr5 7251493 7251494 1
Deletion Chr10 11646106 11646112 6
Deletion Chr5 12443868 12443877 9
Deletion Chr6 17642047 17642049 2
Deletion Chr9 19755001 19767000 11999 3
Deletion Chr10 20693396 20693401 5
Deletion Chr2 21958740 21958741 1 OsKitaake02g213600
Deletion Chr3 24339185 24339194 9
Deletion Chr3 25976512 25976523 11
Deletion Chr1 40236002 40236009 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4661163 4661166 2
Insertion Chr6 5627146 5627149 2
Insertion Chr7 1492239 1492242 2
Insertion Chr12 3196705 3196708 2
Insertion Chr3 16744382 16744384 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 17027646 17028819
Inversion Chr9 17028460 17470031
Inversion Chr4 30663249 30728391
Inversion Chr4 30663261 30728392

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 17027659 Chr1 3504633 OsKitaake01g046600
Translocation Chr9 17028445 Chr1 3504631 OsKitaake01g046600
Translocation Chr10 22200647 Chr3 1390606 OsKitaake03g020200
Translocation Chr10 22200906 Chr3 1389073
Translocation Chr12 26474908 Chr6 29104871 OsKitaake06g268500
Translocation Chr12 26476163 Chr6 29104866 OsKitaake06g268500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4264815	A-C	Homo	UTR_3_PRIME
SBS	Chr1	12280128	C-T	Homo	INTERGENIC
SBS	Chr1	17660252	A-G	Hetero	INTRON
SBS	Chr1	17660253	C-A	Hetero	INTRON
SBS	Chr1	36597775	G-A	Hetero	INTERGENIC
SBS	Chr1	36686244	G-T	Hetero	UTR_5_PRIME
SBS	Chr2	3689664	A-G	Hetero	INTRON
SBS	Chr3	6931311	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g097700
SBS	Chr3	30108693	G-C	Hetero	INTERGENIC
SBS	Chr4	36403382	G-C	Hetero	INTRON
SBS	Chr6	4585010	T-C	Homo	INTERGENIC
SBS	Chr6	15082220	G-T	Hetero	INTERGENIC
SBS	Chr6	28902600	G-A	Hetero	INTRON
SBS	Chr6	29178996	G-A	Hetero	INTRON
SBS	Chr6	29827060	T-C	Hetero	INTERGENIC
SBS	Chr7	3745872	C-T	Hetero	INTERGENIC
SBS	Chr8	7402948	G-A	Hetero	INTERGENIC
SBS	Chr8	11598880	G-A	Hetero	INTERGENIC
SBS	Chr8	13768486	C-A	Hetero	INTERGENIC
SBS	Chr8	20910702	A-G	Hetero	INTRON
SBS	Chr9	16168808	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g116200
SBS	Chr9	16215068	G-T	Hetero	INTERGENIC
SBS	Chr10	18813944	T-A	Hetero	INTERGENIC
SBS	Chr10	19399483	A-G	Hetero	INTERGENIC
SBS	Chr10	22780214	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	20569975	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1093764	1093771	7
Deletion	Chr2	1464873	1464874	1
Deletion	Chr5	7251493	7251494	1
Deletion	Chr10	11646106	11646112	6
Deletion	Chr5	12443868	12443877	9
Deletion	Chr6	17642047	17642049	2
Deletion	Chr9	19755001	19767000	11999	3
Deletion	Chr10	20693396	20693401	5
Deletion	Chr2	21958740	21958741	1	OsKitaake02g213600
Deletion	Chr3	24339185	24339194	9
Deletion	Chr3	25976512	25976523	11
Deletion	Chr1	40236002	40236009	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	17027646	17028819
Inversion	Chr9	17028460	17470031
Inversion	Chr4	30663249	30728391
Inversion	Chr4	30663261	30728392

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes