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Mutant Information

Mutant Name	FN529-BCF2-10 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN529-BCF2-10 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4550588 G-A Homo INTERGENIC
SBS Chr1 12394004 T-G Hetero INTERGENIC
SBS Chr1 36945546 G-A Hetero INTERGENIC
SBS Chr1 43888014 G-A Hetero INTERGENIC
SBS Chr2 4446226 C-A Hetero INTERGENIC
SBS Chr2 8216048 C-T Homo INTERGENIC
SBS Chr2 13800488 C-T Homo INTERGENIC
SBS Chr2 33017278 C-A Homo INTERGENIC
SBS Chr2 33117669 G-T Hetero INTERGENIC
SBS Chr2 35106021 G-T Hetero INTERGENIC
SBS Chr3 5979329 G-A Hetero INTERGENIC
SBS Chr3 19478598 C-A Homo INTERGENIC
SBS Chr3 19478599 T-A Homo INTERGENIC
SBS Chr3 35358375 G-A Homo INTERGENIC
SBS Chr3 35358383 C-T Homo INTERGENIC
SBS Chr4 487167 C-A Hetero INTERGENIC
SBS Chr4 2176808 C-T Hetero INTERGENIC
SBS Chr4 2373933 T-G Hetero INTERGENIC
SBS Chr4 2581761 A-T Hetero INTERGENIC
SBS Chr4 3709324 G-A Hetero INTERGENIC
SBS Chr4 4493172 G-A Hetero INTERGENIC
SBS Chr4 14920091 G-A Homo INTERGENIC
SBS Chr4 18288510 G-A Homo INTERGENIC
SBS Chr4 19641802 C-T Hetero INTERGENIC
SBS Chr4 21289150 T-C Homo INTERGENIC
SBS Chr4 21967819 C-T Homo NON_SYNONYMOUS_CODING OsKitaake04g127600
SBS Chr5 4347487 C-T Hetero INTERGENIC
SBS Chr5 10331319 G-C Homo INTERGENIC
SBS Chr5 12238901 G-A Homo INTERGENIC
SBS Chr5 14370556 G-A Homo INTERGENIC
SBS Chr6 14615731 G-T Homo INTERGENIC
SBS Chr7 8133578 C-T Hetero INTERGENIC
SBS Chr7 9248545 G-A Hetero INTERGENIC
SBS Chr7 9809920 C-T Hetero INTERGENIC
SBS Chr7 11142916 G-A Hetero INTERGENIC
SBS Chr7 17150169 A-T Homo INTERGENIC
SBS Chr7 18801789 C-T Homo INTERGENIC
SBS Chr7 22816436 C-T Homo INTERGENIC
SBS Chr9 13809583 G-T Homo INTRON
SBS Chr10 3716642 G-A Homo INTERGENIC
SBS Chr10 5773106 G-C Hetero INTRON
SBS Chr10 15479548 A-T Homo INTRON
SBS Chr11 2855806 G-T Hetero INTERGENIC
SBS Chr11 12482046 A-G Homo INTERGENIC
SBS Chr12 2840668 T-G Homo INTERGENIC
SBS Chr12 3011255 G-T Homo INTERGENIC
SBS Chr12 15309185 G-T Hetero INTERGENIC
SBS Chr12 18340810 A-T Homo INTERGENIC
SBS Chr12 23316706 T-A Hetero INTERGENIC
SBS Chr12 23827952 T-A Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1228162 1228170 8
Deletion Chr3 3195203 3195204 1
Deletion Chr6 9883373 9883378 5
Deletion Chr7 10737864 10737865 1
Deletion Chr9 11754988 11754992 4
Deletion Chr12 12108777 12108779 2
Deletion Chr3 13447357 13447360 3
Deletion Chr3 16655504 16655505 1
Deletion Chr4 17692004 17692006 2
Deletion Chr3 18843854 18843870 16
Deletion Chr3 20127410 20127413 3
Deletion Chr5 22223063 22223070 7
Deletion Chr2 22787149 22787155 6 OsKitaake02g221500
Deletion Chr5 25054327 25054329 2
Deletion Chr12 26828428 26828431 3
Deletion Chr6 30964308 30964309 1
Deletion Chr3 36041927 36041934 7
Deletion Chr3 36654053 36654054 1 OsKitaake03g408000

Insertions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 1047346 1047356 9
Insertion Chr5 745553 745561 7
Insertion Chr5 3251672 3251675 2
Insertion Chr5 27657357 27657362 4
Insertion Chr6 23633423 23633426 2
Insertion Chr7 3612559 3612562 2
Insertion Chr7 14494661 14494666 4
Insertion Chr8 5518092 5518095 2
Insertion Chr8 17872165 17872168 2
Insertion Chr8 23140028 23140030 1
Insertion Chr9 21784690 21784693 2
Insertion Chr10 11583294 11583297 2
Insertion Chr10 23337240 23337246 5
Insertion Chr11 19896279 19896282 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4550588	G-A	Homo	INTERGENIC
SBS	Chr1	12394004	T-G	Hetero	INTERGENIC
SBS	Chr1	36945546	G-A	Hetero	INTERGENIC
SBS	Chr1	43888014	G-A	Hetero	INTERGENIC
SBS	Chr2	4446226	C-A	Hetero	INTERGENIC
SBS	Chr2	8216048	C-T	Homo	INTERGENIC
SBS	Chr2	13800488	C-T	Homo	INTERGENIC
SBS	Chr2	33017278	C-A	Homo	INTERGENIC
SBS	Chr2	33117669	G-T	Hetero	INTERGENIC
SBS	Chr2	35106021	G-T	Hetero	INTERGENIC
SBS	Chr3	5979329	G-A	Hetero	INTERGENIC
SBS	Chr3	19478598	C-A	Homo	INTERGENIC
SBS	Chr3	19478599	T-A	Homo	INTERGENIC
SBS	Chr3	35358375	G-A	Homo	INTERGENIC
SBS	Chr3	35358383	C-T	Homo	INTERGENIC
SBS	Chr4	487167	C-A	Hetero	INTERGENIC
SBS	Chr4	2176808	C-T	Hetero	INTERGENIC
SBS	Chr4	2373933	T-G	Hetero	INTERGENIC
SBS	Chr4	2581761	A-T	Hetero	INTERGENIC
SBS	Chr4	3709324	G-A	Hetero	INTERGENIC
SBS	Chr4	4493172	G-A	Hetero	INTERGENIC
SBS	Chr4	14920091	G-A	Homo	INTERGENIC
SBS	Chr4	18288510	G-A	Homo	INTERGENIC
SBS	Chr4	19641802	C-T	Hetero	INTERGENIC
SBS	Chr4	21289150	T-C	Homo	INTERGENIC
SBS	Chr4	21967819	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g127600
SBS	Chr5	4347487	C-T	Hetero	INTERGENIC
SBS	Chr5	10331319	G-C	Homo	INTERGENIC
SBS	Chr5	12238901	G-A	Homo	INTERGENIC
SBS	Chr5	14370556	G-A	Homo	INTERGENIC
SBS	Chr6	14615731	G-T	Homo	INTERGENIC
SBS	Chr7	8133578	C-T	Hetero	INTERGENIC
SBS	Chr7	9248545	G-A	Hetero	INTERGENIC
SBS	Chr7	9809920	C-T	Hetero	INTERGENIC
SBS	Chr7	11142916	G-A	Hetero	INTERGENIC
SBS	Chr7	17150169	A-T	Homo	INTERGENIC
SBS	Chr7	18801789	C-T	Homo	INTERGENIC
SBS	Chr7	22816436	C-T	Homo	INTERGENIC
SBS	Chr9	13809583	G-T	Homo	INTRON
SBS	Chr10	3716642	G-A	Homo	INTERGENIC
SBS	Chr10	5773106	G-C	Hetero	INTRON
SBS	Chr10	15479548	A-T	Homo	INTRON
SBS	Chr11	2855806	G-T	Hetero	INTERGENIC
SBS	Chr11	12482046	A-G	Homo	INTERGENIC
SBS	Chr12	2840668	T-G	Homo	INTERGENIC
SBS	Chr12	3011255	G-T	Homo	INTERGENIC
SBS	Chr12	15309185	G-T	Hetero	INTERGENIC
SBS	Chr12	18340810	A-T	Homo	INTERGENIC
SBS	Chr12	23316706	T-A	Hetero	INTERGENIC
SBS	Chr12	23827952	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1228162	1228170	8
Deletion	Chr3	3195203	3195204	1
Deletion	Chr6	9883373	9883378	5
Deletion	Chr7	10737864	10737865	1
Deletion	Chr9	11754988	11754992	4
Deletion	Chr12	12108777	12108779	2
Deletion	Chr3	13447357	13447360	3
Deletion	Chr3	16655504	16655505	1
Deletion	Chr4	17692004	17692006	2
Deletion	Chr3	18843854	18843870	16
Deletion	Chr3	20127410	20127413	3
Deletion	Chr5	22223063	22223070	7
Deletion	Chr2	22787149	22787155	6	OsKitaake02g221500
Deletion	Chr5	25054327	25054329	2
Deletion	Chr12	26828428	26828431	3
Deletion	Chr6	30964308	30964309	1
Deletion	Chr3	36041927	36041934	7
Deletion	Chr3	36654053	36654054	1	OsKitaake03g408000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes