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Mutant Information

Mutant Name	FN530-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN530-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 44165630 A-G Hetero INTERGENIC
SBS Chr2 19040887 G-A Hetero INTERGENIC
SBS Chr2 27787226 T-A Hetero INTRON
SBS Chr2 36637988 C-A Homo INTERGENIC
SBS Chr3 5038984 G-A Hetero INTERGENIC
SBS Chr3 11371992 T-C Hetero INTRON
SBS Chr3 22705350 G-T Hetero INTERGENIC
SBS Chr4 8004736 G-A Homo INTERGENIC
SBS Chr4 11930316 G-T Homo INTERGENIC
SBS Chr4 12736904 C-T Homo INTERGENIC
SBS Chr4 13450408 G-A Hetero INTERGENIC
SBS Chr4 13764590 C-T Hetero INTERGENIC
SBS Chr4 23722941 G-A Homo INTERGENIC
SBS Chr4 26683836 A-T Hetero INTERGENIC
SBS Chr4 26915103 C-A Hetero INTERGENIC
SBS Chr5 5148042 T-A Hetero INTRON
SBS Chr5 27609248 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g251900
SBS Chr5 27609249 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 29774835 T-C Hetero INTRON
SBS Chr6 11783971 G-A Homo INTERGENIC
SBS Chr6 22781121 C-A Homo UTR_3_PRIME
SBS Chr6 22781122 G-A Homo UTR_3_PRIME
SBS Chr6 29605310 C-T Hetero INTERGENIC
SBS Chr7 14240438 A-G Homo NON_SYNONYMOUS_CODING OsKitaake07g122900
SBS Chr7 15426232 G-A Homo INTERGENIC
SBS Chr8 22473828 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g171700
SBS Chr8 27612727 A-C Hetero INTERGENIC
SBS Chr9 5997946 A-G Hetero INTERGENIC
SBS Chr10 2043665 C-T Homo INTERGENIC
SBS Chr11 1003148 A-C Hetero INTERGENIC
SBS Chr12 12031281 A-G Homo INTERGENIC
SBS Chr12 15595140 T-G Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 4322774 4322776 2
Deletion Chr1 4728284 4728286 2
Deletion Chr10 4740378 4740388 10
Deletion Chr6 4760949 4760955 6
Deletion Chr1 4930860 4930865 5
Deletion Chr3 5887412 5887413 1
Deletion Chr9 6451479 6451481 2
Deletion Chr9 6686003 6686105 102
Deletion Chr10 9325543 9325552 9
Deletion Chr4 9668401 9668406 5
Deletion Chr12 12005428 12005442 14
Deletion Chr5 15426733 15426735 2 OsKitaake05g118300
Deletion Chr3 16971236 16971240 4
Deletion Chr12 17388618 17388620 2
Deletion Chr11 18494884 18494892 8
Deletion Chr8 18568746 18568764 18
Deletion Chr8 20567191 20567196 5
Deletion Chr4 21487162 21487163 1 OsKitaake04g120800
Deletion Chr9 21862676 21862677 1
Deletion Chr6 22773741 22773752 11
Deletion Chr3 34305240 34305251 11 OsKitaake03g371600
Deletion Chr3 37454558 37454559 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 6331620 6331623 2
Insertion Chr5 15513322 15513324 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 23970220 Chr5 16825163
Translocation Chr11 23970232 Chr5 16821854

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	44165630	A-G	Hetero	INTERGENIC
SBS	Chr2	19040887	G-A	Hetero	INTERGENIC
SBS	Chr2	27787226	T-A	Hetero	INTRON
SBS	Chr2	36637988	C-A	Homo	INTERGENIC
SBS	Chr3	5038984	G-A	Hetero	INTERGENIC
SBS	Chr3	11371992	T-C	Hetero	INTRON
SBS	Chr3	22705350	G-T	Hetero	INTERGENIC
SBS	Chr4	8004736	G-A	Homo	INTERGENIC
SBS	Chr4	11930316	G-T	Homo	INTERGENIC
SBS	Chr4	12736904	C-T	Homo	INTERGENIC
SBS	Chr4	13450408	G-A	Hetero	INTERGENIC
SBS	Chr4	13764590	C-T	Hetero	INTERGENIC
SBS	Chr4	23722941	G-A	Homo	INTERGENIC
SBS	Chr4	26683836	A-T	Hetero	INTERGENIC
SBS	Chr4	26915103	C-A	Hetero	INTERGENIC
SBS	Chr5	5148042	T-A	Hetero	INTRON
SBS	Chr5	27609248	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g251900
SBS	Chr5	27609249	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	29774835	T-C	Hetero	INTRON
SBS	Chr6	11783971	G-A	Homo	INTERGENIC
SBS	Chr6	22781121	C-A	Homo	UTR_3_PRIME
SBS	Chr6	22781122	G-A	Homo	UTR_3_PRIME
SBS	Chr6	29605310	C-T	Hetero	INTERGENIC
SBS	Chr7	14240438	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g122900
SBS	Chr7	15426232	G-A	Homo	INTERGENIC
SBS	Chr8	22473828	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g171700
SBS	Chr8	27612727	A-C	Hetero	INTERGENIC
SBS	Chr9	5997946	A-G	Hetero	INTERGENIC
SBS	Chr10	2043665	C-T	Homo	INTERGENIC
SBS	Chr11	1003148	A-C	Hetero	INTERGENIC
SBS	Chr12	12031281	A-G	Homo	INTERGENIC
SBS	Chr12	15595140	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4322774	4322776	2
Deletion	Chr1	4728284	4728286	2
Deletion	Chr10	4740378	4740388	10
Deletion	Chr6	4760949	4760955	6
Deletion	Chr1	4930860	4930865	5
Deletion	Chr3	5887412	5887413	1
Deletion	Chr9	6451479	6451481	2
Deletion	Chr9	6686003	6686105	102
Deletion	Chr10	9325543	9325552	9
Deletion	Chr4	9668401	9668406	5
Deletion	Chr12	12005428	12005442	14
Deletion	Chr5	15426733	15426735	2	OsKitaake05g118300
Deletion	Chr3	16971236	16971240	4
Deletion	Chr12	17388618	17388620	2
Deletion	Chr11	18494884	18494892	8
Deletion	Chr8	18568746	18568764	18
Deletion	Chr8	20567191	20567196	5
Deletion	Chr4	21487162	21487163	1	OsKitaake04g120800
Deletion	Chr9	21862676	21862677	1
Deletion	Chr6	22773741	22773752	11
Deletion	Chr3	34305240	34305251	11	OsKitaake03g371600
Deletion	Chr3	37454558	37454559	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	23970220	Chr5	16825163
Translocation	Chr11	23970232	Chr5	16821854

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes