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Mutant Information

Mutant Name	FN531-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN531-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 17

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4715862 G-T Homo INTERGENIC
SBS Chr2 323649 A-T Homo INTERGENIC
SBS Chr2 28824816 C-T Hetero INTERGENIC
SBS Chr3 7430423 T-A Homo INTERGENIC
SBS Chr3 7430424 G-A Homo INTERGENIC
SBS Chr3 7430425 C-A Homo INTERGENIC
SBS Chr4 6457955 C-A Hetero INTERGENIC
SBS Chr4 10237104 C-T Hetero INTERGENIC
SBS Chr4 27883667 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g206500
SBS Chr4 27883668 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g206500
SBS Chr4 30257165 A-G Hetero INTERGENIC
SBS Chr7 23184887 T-G Homo UTR_3_PRIME
SBS Chr7 27443950 T-C Hetero INTERGENIC
SBS Chr9 21222706 G-A Homo INTERGENIC
SBS Chr10 2158709 T-A Homo INTRON
SBS Chr11 17389119 G-A Homo INTERGENIC
SBS Chr12 6056575 T-G Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2897001 2970000 72999 9
Deletion Chr11 13024521 13024529 8
Deletion Chr11 13171077 13171078 1
Deletion Chr1 16076781 16076783 2
Deletion Chr7 20889329 20889340 11
Deletion Chr5 28849048 28849055 7

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 17284106 17284109 2
Insertion Chr7 25703853 25703858 4
Insertion Chr7 26359796 26359799 2
Insertion Chr8 27137979 27137982 2
Insertion Chr5 30239995 30240003 7
Insertion Chr6 1373469 1373476 6
Insertion Chr9 9276640 9276643 2
Insertion Chr10 6741897 6741900 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 3134203 3146392 OsKitaake08g035700
Inversion Chr7 6054154 6198690 OsKitaake07g073500
Inversion Chr8 21829654 22500772
Inversion Chr8 22488293 22500767 OsKitaake08g171750
Inversion Chr1 39881244 40498568 2
Inversion Chr1 39881252 40498576 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 24030695 Chr1 37118065 OsKitaake08g185300
Translocation Chr8 24031215 Chr1 37118077 OsKitaake08g185300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4715862	G-T	Homo	INTERGENIC
SBS	Chr2	323649	A-T	Homo	INTERGENIC
SBS	Chr2	28824816	C-T	Hetero	INTERGENIC
SBS	Chr3	7430423	T-A	Homo	INTERGENIC
SBS	Chr3	7430424	G-A	Homo	INTERGENIC
SBS	Chr3	7430425	C-A	Homo	INTERGENIC
SBS	Chr4	6457955	C-A	Hetero	INTERGENIC
SBS	Chr4	10237104	C-T	Hetero	INTERGENIC
SBS	Chr4	27883667	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g206500
SBS	Chr4	27883668	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g206500
SBS	Chr4	30257165	A-G	Hetero	INTERGENIC
SBS	Chr7	23184887	T-G	Homo	UTR_3_PRIME
SBS	Chr7	27443950	T-C	Hetero	INTERGENIC
SBS	Chr9	21222706	G-A	Homo	INTERGENIC
SBS	Chr10	2158709	T-A	Homo	INTRON
SBS	Chr11	17389119	G-A	Homo	INTERGENIC
SBS	Chr12	6056575	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2897001	2970000	72999	9
Deletion	Chr11	13024521	13024529	8
Deletion	Chr11	13171077	13171078	1
Deletion	Chr1	16076781	16076783	2
Deletion	Chr7	20889329	20889340	11
Deletion	Chr5	28849048	28849055	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3134203	3146392	OsKitaake08g035700
Inversion	Chr7	6054154	6198690	OsKitaake07g073500
Inversion	Chr8	21829654	22500772
Inversion	Chr8	22488293	22500767	OsKitaake08g171750
Inversion	Chr1	39881244	40498568	2
Inversion	Chr1	39881252	40498576	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes