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Mutant Information

Mutant Name	FN533-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN533-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9353991 G-A Homo INTRON
SBS Chr1 14421993 G-C Homo INTERGENIC
SBS Chr1 27376249 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g266500
SBS Chr1 30337034 G-A Hetero INTERGENIC
SBS Chr1 32513386 C-T Hetero INTERGENIC
SBS Chr2 6674102 T-C Homo INTERGENIC
SBS Chr2 18135082 G-A Hetero INTERGENIC
SBS Chr2 23766973 G-A Hetero INTERGENIC
SBS Chr2 32096918 C-T Hetero INTERGENIC
SBS Chr3 2499216 G-T Hetero INTERGENIC
SBS Chr3 12374280 T-A Hetero INTERGENIC
SBS Chr3 20830879 G-A Homo INTERGENIC
SBS Chr3 28543970 A-G Homo INTERGENIC
SBS Chr3 29596339 G-A Homo INTERGENIC
SBS Chr3 34195643 G-C Homo INTERGENIC
SBS Chr4 12324708 G-A Hetero UTR_5_PRIME
SBS Chr5 128092 G-A Homo INTERGENIC
SBS Chr5 128093 T-A Homo INTERGENIC
SBS Chr6 2349861 C-A Homo INTERGENIC
SBS Chr6 9433935 T-G Hetero INTERGENIC
SBS Chr6 15431521 G-T Hetero INTERGENIC
SBS Chr7 13148055 G-C Hetero INTERGENIC
SBS Chr7 23143108 A-G Hetero INTERGENIC
SBS Chr9 1039881 T-G Hetero INTERGENIC
SBS Chr9 4017730 C-G Hetero INTERGENIC
SBS Chr9 17251445 A-C Hetero INTRON
SBS Chr10 5923982 G-C Homo INTRON
SBS Chr11 11021470 A-G Hetero INTERGENIC
SBS Chr12 5418242 C-T Hetero INTERGENIC
SBS Chr12 10534812 T-A Hetero INTERGENIC
SBS Chr12 10534816 C-A Hetero INTERGENIC
SBS Chr12 18245008 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g133700
SBS Chr12 19340579 C-A Hetero INTERGENIC
SBS Chr12 23619081 T-C Homo INTERGENIC
SBS Chr12 26960901 T-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1048001 1158000 109999 16
Deletion Chr11 4291711 4291713 2
Deletion Chr10 5696088 5696089 1
Deletion Chr5 9849001 9861000 11999 2
Deletion Chr12 13511445 13511447 2
Deletion Chr7 13722001 13728000 5999
Deletion Chr9 21209818 21209822 4
Deletion Chr6 23158001 23196000 37999 5
Deletion Chr12 24371605 24371613 8
Deletion Chr11 24525136 24525143 7
Deletion Chr4 26923939 26923944 5
Deletion Chr1 35423355 35423365 10
Deletion Chr1 37215968 37215979 11

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22928324 22928327 2
Insertion Chr1 34919097 34919100 2
Insertion Chr5 128069 128071 1
Insertion Chr5 26912875 26912878 2
Insertion Chr7 18906329 18906332 2
Insertion Chr7 20549615 20549618 2
Insertion Chr11 3971987 3971995 7
Insertion Chr3 4089589 4089591 1
Insertion Chr3 16743903 16743905 1

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1155767 Chr3 2996674 OsKitaake03g042200
Translocation Chr11 1178752 Chr2 2176562
Translocation Chr12 9891585 Chr8 17552774 OsKitaake08g131700
Translocation Chr12 9891594 Chr8 17552949 OsKitaake08g131700
Translocation Chr8 17552176 Chr6 23196862 2
Translocation Chr8 17552768 Chr6 23153862 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9353991	G-A	Homo	INTRON
SBS	Chr1	14421993	G-C	Homo	INTERGENIC
SBS	Chr1	27376249	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g266500
SBS	Chr1	30337034	G-A	Hetero	INTERGENIC
SBS	Chr1	32513386	C-T	Hetero	INTERGENIC
SBS	Chr2	6674102	T-C	Homo	INTERGENIC
SBS	Chr2	18135082	G-A	Hetero	INTERGENIC
SBS	Chr2	23766973	G-A	Hetero	INTERGENIC
SBS	Chr2	32096918	C-T	Hetero	INTERGENIC
SBS	Chr3	2499216	G-T	Hetero	INTERGENIC
SBS	Chr3	12374280	T-A	Hetero	INTERGENIC
SBS	Chr3	20830879	G-A	Homo	INTERGENIC
SBS	Chr3	28543970	A-G	Homo	INTERGENIC
SBS	Chr3	29596339	G-A	Homo	INTERGENIC
SBS	Chr3	34195643	G-C	Homo	INTERGENIC
SBS	Chr4	12324708	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	128092	G-A	Homo	INTERGENIC
SBS	Chr5	128093	T-A	Homo	INTERGENIC
SBS	Chr6	2349861	C-A	Homo	INTERGENIC
SBS	Chr6	9433935	T-G	Hetero	INTERGENIC
SBS	Chr6	15431521	G-T	Hetero	INTERGENIC
SBS	Chr7	13148055	G-C	Hetero	INTERGENIC
SBS	Chr7	23143108	A-G	Hetero	INTERGENIC
SBS	Chr9	1039881	T-G	Hetero	INTERGENIC
SBS	Chr9	4017730	C-G	Hetero	INTERGENIC
SBS	Chr9	17251445	A-C	Hetero	INTRON
SBS	Chr10	5923982	G-C	Homo	INTRON
SBS	Chr11	11021470	A-G	Hetero	INTERGENIC
SBS	Chr12	5418242	C-T	Hetero	INTERGENIC
SBS	Chr12	10534812	T-A	Hetero	INTERGENIC
SBS	Chr12	10534816	C-A	Hetero	INTERGENIC
SBS	Chr12	18245008	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g133700
SBS	Chr12	19340579	C-A	Hetero	INTERGENIC
SBS	Chr12	23619081	T-C	Homo	INTERGENIC
SBS	Chr12	26960901	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1048001	1158000	109999	16
Deletion	Chr11	4291711	4291713	2
Deletion	Chr10	5696088	5696089	1
Deletion	Chr5	9849001	9861000	11999	2
Deletion	Chr12	13511445	13511447	2
Deletion	Chr7	13722001	13728000	5999
Deletion	Chr9	21209818	21209822	4
Deletion	Chr6	23158001	23196000	37999	5
Deletion	Chr12	24371605	24371613	8
Deletion	Chr11	24525136	24525143	7
Deletion	Chr4	26923939	26923944	5
Deletion	Chr1	35423355	35423365	10
Deletion	Chr1	37215968	37215979	11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1155767	Chr3	2996674	OsKitaake03g042200
Translocation	Chr11	1178752	Chr2	2176562
Translocation	Chr12	9891585	Chr8	17552774	OsKitaake08g131700
Translocation	Chr12	9891594	Chr8	17552949	OsKitaake08g131700
Translocation	Chr8	17552176	Chr6	23196862	2
Translocation	Chr8	17552768	Chr6	23153862	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes