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Mutant Information

Mutant Name	FN534-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN534-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 906151 G-C Hetero INTERGENIC
SBS Chr1 23145418 G-A Hetero INTERGENIC
SBS Chr1 40009579 C-T Hetero INTERGENIC
SBS Chr2 10174278 A-G Hetero INTRON
SBS Chr2 22711303 G-A Hetero INTERGENIC
SBS Chr2 32196162 T-A Hetero INTRON
SBS Chr3 6620967 G-T Homo INTERGENIC
SBS Chr3 10248724 G-C Hetero INTRON
SBS Chr3 18758046 A-T Hetero INTERGENIC
SBS Chr3 26511139 A-T Homo INTERGENIC
SBS Chr4 344366 A-G Hetero INTERGENIC
SBS Chr4 12075311 A-G Hetero UTR_3_PRIME
SBS Chr4 14092586 G-A Hetero INTERGENIC
SBS Chr5 3747013 C-G Hetero INTRON
SBS Chr5 6443256 C-T Hetero INTERGENIC
SBS Chr5 7321712 G-T Hetero INTERGENIC
SBS Chr6 13762235 T-G Homo INTERGENIC
SBS Chr6 27294266 T-C Homo INTERGENIC
SBS Chr7 1999901 G-A Hetero INTRON
SBS Chr7 1999902 G-A Hetero INTRON
SBS Chr7 1999907 G-A Hetero INTRON
SBS Chr7 7616982 G-T Homo INTERGENIC
SBS Chr8 9645420 C-T Hetero INTERGENIC
SBS Chr8 14397455 C-T Hetero INTRON
SBS Chr8 15294978 G-A Hetero INTERGENIC
SBS Chr9 6019528 T-A Hetero INTERGENIC
SBS Chr11 21488442 C-T Hetero INTERGENIC
SBS Chr12 23925876 C-T Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1262791 1262794 3
Deletion Chr2 1413116 1413128 12 OsKitaake02g021700
Deletion Chr12 7783994 7783999 5
Deletion Chr2 12968001 13025000 56999 3
Deletion Chr2 14747241 14747243 2
Deletion Chr9 16166123 16166126 3 OsKitaake09g116200
Deletion Chr3 19420674 19420683 9
Deletion Chr4 25696682 25696691 9
Deletion Chr7 28551996 28552002 6

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 13767211 13767214 2
Insertion Chr5 6205447 6205452 4
Insertion Chr5 15149474 15149477 2
Insertion Chr6 26744194 26744197 2
Insertion Chr9 12250381 12250384 2
Insertion Chr9 18543934 18543937 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2343164 Chr2 16431643
Translocation Chr10 2343813 Chr2 16431645
Translocation Chr7 13123068 Chr1 27459156
Translocation Chr7 13123607 Chr1 27459157
Translocation Chr7 20998638 Chr1 31181252
Translocation Chr7 21002235 Chr1 31181258

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	906151	G-C	Hetero	INTERGENIC
SBS	Chr1	23145418	G-A	Hetero	INTERGENIC
SBS	Chr1	40009579	C-T	Hetero	INTERGENIC
SBS	Chr2	10174278	A-G	Hetero	INTRON
SBS	Chr2	22711303	G-A	Hetero	INTERGENIC
SBS	Chr2	32196162	T-A	Hetero	INTRON
SBS	Chr3	6620967	G-T	Homo	INTERGENIC
SBS	Chr3	10248724	G-C	Hetero	INTRON
SBS	Chr3	18758046	A-T	Hetero	INTERGENIC
SBS	Chr3	26511139	A-T	Homo	INTERGENIC
SBS	Chr4	344366	A-G	Hetero	INTERGENIC
SBS	Chr4	12075311	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	14092586	G-A	Hetero	INTERGENIC
SBS	Chr5	3747013	C-G	Hetero	INTRON
SBS	Chr5	6443256	C-T	Hetero	INTERGENIC
SBS	Chr5	7321712	G-T	Hetero	INTERGENIC
SBS	Chr6	13762235	T-G	Homo	INTERGENIC
SBS	Chr6	27294266	T-C	Homo	INTERGENIC
SBS	Chr7	1999901	G-A	Hetero	INTRON
SBS	Chr7	1999902	G-A	Hetero	INTRON
SBS	Chr7	1999907	G-A	Hetero	INTRON
SBS	Chr7	7616982	G-T	Homo	INTERGENIC
SBS	Chr8	9645420	C-T	Hetero	INTERGENIC
SBS	Chr8	14397455	C-T	Hetero	INTRON
SBS	Chr8	15294978	G-A	Hetero	INTERGENIC
SBS	Chr9	6019528	T-A	Hetero	INTERGENIC
SBS	Chr11	21488442	C-T	Hetero	INTERGENIC
SBS	Chr12	23925876	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1262791	1262794	3
Deletion	Chr2	1413116	1413128	12	OsKitaake02g021700
Deletion	Chr12	7783994	7783999	5
Deletion	Chr2	12968001	13025000	56999	3
Deletion	Chr2	14747241	14747243	2
Deletion	Chr9	16166123	16166126	3	OsKitaake09g116200
Deletion	Chr3	19420674	19420683	9
Deletion	Chr4	25696682	25696691	9
Deletion	Chr7	28551996	28552002	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2343164	Chr2	16431643
Translocation	Chr10	2343813	Chr2	16431645
Translocation	Chr7	13123068	Chr1	27459156
Translocation	Chr7	13123607	Chr1	27459157
Translocation	Chr7	20998638	Chr1	31181252
Translocation	Chr7	21002235	Chr1	31181258

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes