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Mutant Information

Mutant Name	FN536-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN536-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6460668 T-C Hetero INTRON
SBS Chr1 13681479 A-C Homo INTERGENIC
SBS Chr2 33155664 G-A Homo UTR_5_PRIME
SBS Chr3 5591532 C-T Homo INTERGENIC
SBS Chr3 5591536 A-T Homo INTERGENIC
SBS Chr3 20669497 G-A Homo INTERGENIC
SBS Chr3 23784069 T-C Hetero INTERGENIC
SBS Chr3 24611345 C-T Hetero INTERGENIC
SBS Chr3 27541738 T-A Hetero INTERGENIC
SBS Chr4 2792237 T-A Hetero INTERGENIC
SBS Chr4 4748797 T-A Hetero INTERGENIC
SBS Chr4 4748799 T-G Hetero INTERGENIC
SBS Chr4 26071837 C-T Hetero INTERGENIC
SBS Chr4 28700555 C-T Hetero INTERGENIC
SBS Chr5 11383884 G-C Hetero INTERGENIC
SBS Chr5 25811143 T-A Hetero INTRON
SBS Chr6 29826154 C-T Hetero INTERGENIC
SBS Chr7 9449276 T-A Hetero INTERGENIC
SBS Chr8 2657323 G-C Hetero INTERGENIC
SBS Chr8 11166926 T-G Hetero INTERGENIC
SBS Chr9 3067807 A-G Homo INTERGENIC
SBS Chr10 5517334 T-G Hetero INTERGENIC
SBS Chr10 9986862 G-A Homo INTERGENIC
SBS Chr11 25460802 G-A Hetero INTERGENIC
SBS Chr12 13058096 G-T Hetero INTERGENIC
SBS Chr12 14511286 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g116300

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2473840 2473852 12
Deletion Chr7 2795134 2795136 2
Deletion Chr2 2891364 2891367 3
Deletion Chr8 3295731 3295741 10
Deletion Chr2 4472001 4481000 8999
Deletion Chr5 6021001 6344000 322999 33
Deletion Chr10 9983862 9983863 1
Deletion Chr1 13487410 13487416 6
Deletion Chr6 13928089 13928095 6 OsKitaake06g145000
Deletion Chr10 13940976 13940981 5
Deletion Chr1 17087435 17087442 7
Deletion Chr1 19199599 19199600 1
Deletion Chr7 22964971 22964975 4
Deletion Chr3 25561166 25561168 2
Deletion Chr6 26424962 26424970 8
Deletion Chr5 30223346 30223347 1
Deletion Chr1 36918114 36918115 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 7069809 7069813 3
Insertion Chr8 11655385 11655388 2
Insertion Chr10 20713025 20713028 2
Insertion Chr12 4269706 4269709 2
Insertion Chr12 24610157 24610160 2
Insertion Chr4 10454656 10454658 1
Insertion Chr10 23539482 23539487 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 16475101 16530932
Inversion Chr3 16475119 16530947
Inversion Chr9 19314047 19470754 OsKitaake09g156500
Inversion Chr9 19314056 19470758 OsKitaake09g156500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6460668	T-C	Hetero	INTRON
SBS	Chr1	13681479	A-C	Homo	INTERGENIC
SBS	Chr2	33155664	G-A	Homo	UTR_5_PRIME
SBS	Chr3	5591532	C-T	Homo	INTERGENIC
SBS	Chr3	5591536	A-T	Homo	INTERGENIC
SBS	Chr3	20669497	G-A	Homo	INTERGENIC
SBS	Chr3	23784069	T-C	Hetero	INTERGENIC
SBS	Chr3	24611345	C-T	Hetero	INTERGENIC
SBS	Chr3	27541738	T-A	Hetero	INTERGENIC
SBS	Chr4	2792237	T-A	Hetero	INTERGENIC
SBS	Chr4	4748797	T-A	Hetero	INTERGENIC
SBS	Chr4	4748799	T-G	Hetero	INTERGENIC
SBS	Chr4	26071837	C-T	Hetero	INTERGENIC
SBS	Chr4	28700555	C-T	Hetero	INTERGENIC
SBS	Chr5	11383884	G-C	Hetero	INTERGENIC
SBS	Chr5	25811143	T-A	Hetero	INTRON
SBS	Chr6	29826154	C-T	Hetero	INTERGENIC
SBS	Chr7	9449276	T-A	Hetero	INTERGENIC
SBS	Chr8	2657323	G-C	Hetero	INTERGENIC
SBS	Chr8	11166926	T-G	Hetero	INTERGENIC
SBS	Chr9	3067807	A-G	Homo	INTERGENIC
SBS	Chr10	5517334	T-G	Hetero	INTERGENIC
SBS	Chr10	9986862	G-A	Homo	INTERGENIC
SBS	Chr11	25460802	G-A	Hetero	INTERGENIC
SBS	Chr12	13058096	G-T	Hetero	INTERGENIC
SBS	Chr12	14511286	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g116300

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2473840	2473852	12
Deletion	Chr7	2795134	2795136	2
Deletion	Chr2	2891364	2891367	3
Deletion	Chr8	3295731	3295741	10
Deletion	Chr2	4472001	4481000	8999
Deletion	Chr5	6021001	6344000	322999	33
Deletion	Chr10	9983862	9983863	1
Deletion	Chr1	13487410	13487416	6
Deletion	Chr6	13928089	13928095	6	OsKitaake06g145000
Deletion	Chr10	13940976	13940981	5
Deletion	Chr1	17087435	17087442	7
Deletion	Chr1	19199599	19199600	1
Deletion	Chr7	22964971	22964975	4
Deletion	Chr3	25561166	25561168	2
Deletion	Chr6	26424962	26424970	8
Deletion	Chr5	30223346	30223347	1
Deletion	Chr1	36918114	36918115	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	16475101	16530932
Inversion	Chr3	16475119	16530947
Inversion	Chr9	19314047	19470754	OsKitaake09g156500
Inversion	Chr9	19314056	19470758	OsKitaake09g156500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes