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| Mutant Information |
|---|
| Mutant Name | FN537-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN537-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9951793 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 9951794 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 20175805 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 20175806 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 558612 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23240076 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 31055920 | A-G | Homo | INTRON | |
| SBS | Chr5 | 28496478 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 14458222 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 14458223 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 9362050 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 14501585 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14501589 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 19838563 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 25477700 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 1909039 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 16459846 | A-C | Homo | INTRON | |
| SBS | Chr9 | 2540256 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 4311685 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 15685959 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 22560700 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 22560701 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 3161756 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 15091503 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 18361174 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 28060211 | G-T | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 1984308 | 1984321 | 13 | |
| Deletion | Chr9 | 4543750 | 4543760 | 10 | |
| Deletion | Chr4 | 5441273 | 5441275 | 2 | |
| Deletion | Chr11 | 11326365 | 11326366 | 1 | |
| Deletion | Chr9 | 11851001 | 11882000 | 30999 | 4 |
| Deletion | Chr8 | 12807026 | 12807027 | 1 | |
| Deletion | Chr5 | 18766930 | 18766931 | 1 | |
| Deletion | Chr4 | 19474644 | 19474659 | 15 | |
| Deletion | Chr7 | 19707437 | 19707441 | 4 | |
| Deletion | Chr1 | 23944171 | 23944172 | 1 | |
| Deletion | Chr6 | 24012680 | 24012682 | 2 | |
| Deletion | Chr6 | 29930663 | 29930675 | 12 | OsKitaake06g280400 |
| Deletion | Chr4 | 31401099 | 31401103 | 4 | |
| Deletion | Chr3 | 31732001 | 31742000 | 9999 | OsKitaake03g334600 |
| Deletion | Chr2 | 31897841 | 31897842 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 31401069 | 31401072 | 2 | |
| Insertion | Chr4 | 31401058 | 31401061 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 29574452 | Chr5 | 135357 | OsKitaake07g285300 |
| Translocation | Chr7 | 29574478 | Chr5 | 135820 | OsKitaake07g285300 |