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Mutant Information

Mutant Name	FN540-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN540-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23060142 T-C Hetero INTERGENIC
SBS Chr1 36563687 A-T Hetero INTRON
SBS Chr2 7662010 A-T Hetero INTERGENIC
SBS Chr2 25330018 C-T Hetero INTERGENIC
SBS Chr2 28442402 G-T Homo INTERGENIC
SBS Chr3 17686540 G-A Homo INTERGENIC
SBS Chr4 10424465 T-G Homo INTERGENIC
SBS Chr4 23751310 A-C Homo INTERGENIC
SBS Chr4 35887642 C-T Homo SYNONYMOUS_CODING
SBS Chr5 5979758 G-A Hetero INTERGENIC
SBS Chr5 28267889 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 29041183 T-A Hetero INTERGENIC
SBS Chr7 15814956 G-A Homo INTERGENIC
SBS Chr8 701851 G-A Hetero INTERGENIC
SBS Chr8 1654107 G-T Hetero UTR_5_PRIME
SBS Chr8 14952319 G-T Hetero INTERGENIC
SBS Chr8 21603708 G-A Hetero INTERGENIC
SBS Chr10 3097659 C-T Homo INTERGENIC
SBS Chr10 3097662 C-A Homo INTERGENIC
SBS Chr10 9512960 C-T Homo INTERGENIC
SBS Chr11 7314562 C-T Hetero INTERGENIC
SBS Chr11 7445373 C-A Homo INTERGENIC
SBS Chr11 18011375 T-C Hetero INTERGENIC
SBS Chr11 28728972 T-A Hetero INTERGENIC
SBS Chr12 2268553 A-G Homo INTERGENIC
SBS Chr12 5952089 G-A Hetero INTERGENIC
SBS Chr12 9755815 T-C Homo INTERGENIC
SBS Chr12 14641488 G-A Homo INTERGENIC
SBS Chr12 18903393 G-C Hetero INTERGENIC
SBS Chr12 19255736 G-A Homo INTRON
SBS Chr12 21359465 T-A Hetero INTERGENIC
SBS Chr12 22602047 C-G Hetero INTRON
SBS Chr12 23161126 T-C Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3227747 3227748 1
Deletion Chr8 6808991 6808992 1
Deletion Chr7 15059262 15059269 7
Deletion Chr5 19433441 19433442 1
Deletion Chr11 19898881 19898882 1
Deletion Chr4 21548904 21548905 1
Deletion Chr3 32722356 32722359 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26340394 26340397 2
Insertion Chr3 5363034 5363037 2
Insertion Chr8 2992859 2992862 2
Insertion Chr4 11077459 11077461 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 10062668 10275440
Inversion Chr8 10062673 10275440

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 2275463 Chr2 28126726
Translocation Chr3 2278927 Chr2 28126719

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23060142	T-C	Hetero	INTERGENIC
SBS	Chr1	36563687	A-T	Hetero	INTRON
SBS	Chr2	7662010	A-T	Hetero	INTERGENIC
SBS	Chr2	25330018	C-T	Hetero	INTERGENIC
SBS	Chr2	28442402	G-T	Homo	INTERGENIC
SBS	Chr3	17686540	G-A	Homo	INTERGENIC
SBS	Chr4	10424465	T-G	Homo	INTERGENIC
SBS	Chr4	23751310	A-C	Homo	INTERGENIC
SBS	Chr4	35887642	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	5979758	G-A	Hetero	INTERGENIC
SBS	Chr5	28267889	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	29041183	T-A	Hetero	INTERGENIC
SBS	Chr7	15814956	G-A	Homo	INTERGENIC
SBS	Chr8	701851	G-A	Hetero	INTERGENIC
SBS	Chr8	1654107	G-T	Hetero	UTR_5_PRIME
SBS	Chr8	14952319	G-T	Hetero	INTERGENIC
SBS	Chr8	21603708	G-A	Hetero	INTERGENIC
SBS	Chr10	3097659	C-T	Homo	INTERGENIC
SBS	Chr10	3097662	C-A	Homo	INTERGENIC
SBS	Chr10	9512960	C-T	Homo	INTERGENIC
SBS	Chr11	7314562	C-T	Hetero	INTERGENIC
SBS	Chr11	7445373	C-A	Homo	INTERGENIC
SBS	Chr11	18011375	T-C	Hetero	INTERGENIC
SBS	Chr11	28728972	T-A	Hetero	INTERGENIC
SBS	Chr12	2268553	A-G	Homo	INTERGENIC
SBS	Chr12	5952089	G-A	Hetero	INTERGENIC
SBS	Chr12	9755815	T-C	Homo	INTERGENIC
SBS	Chr12	14641488	G-A	Homo	INTERGENIC
SBS	Chr12	18903393	G-C	Hetero	INTERGENIC
SBS	Chr12	19255736	G-A	Homo	INTRON
SBS	Chr12	21359465	T-A	Hetero	INTERGENIC
SBS	Chr12	22602047	C-G	Hetero	INTRON
SBS	Chr12	23161126	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3227747	3227748	1
Deletion	Chr8	6808991	6808992	1
Deletion	Chr7	15059262	15059269	7
Deletion	Chr5	19433441	19433442	1
Deletion	Chr11	19898881	19898882	1
Deletion	Chr4	21548904	21548905	1
Deletion	Chr3	32722356	32722359	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	10062668	10275440
Inversion	Chr8	10062673	10275440

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes