Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN541-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN541-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 29956266 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 10431506 | A-C | Hetero | INTRON | |
| SBS | Chr4 | 35604134 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 1514999 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 7682305 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 15873821 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 16220276 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 7278696 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 7278697 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 10961229 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 13361922 | T-C | Homo | INTRON | |
| SBS | Chr6 | 21215195 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 70791 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 15077544 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 18577021 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 20802899 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 1388039 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 22376153 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 8042119 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 18825516 | T-G | Homo | INTERGENIC | |
| SBS | Chr10 | 14111374 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 19237215 | A-G | Hetero | INTRON | |
| SBS | Chr11 | 3404381 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8677746 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 18809237 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 19782951 | A-T | Hetero | INTRON | |
| SBS | Chr12 | 1201022 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g017200 |
| SBS | Chr12 | 8525206 | G-T | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 3134796 | 3134804 | 8 | |
| Deletion | Chr5 | 4867336 | 4867345 | 9 | |
| Deletion | Chr5 | 7558545 | 7558548 | 3 | |
| Deletion | Chr8 | 8514719 | 8514725 | 6 | |
| Deletion | Chr8 | 12042143 | 12042144 | 1 | |
| Deletion | Chr3 | 13152032 | 13152033 | 1 | |
| Deletion | Chr9 | 13403385 | 13403387 | 2 | |
| Deletion | Chr7 | 16890232 | 16890233 | 1 | |
| Deletion | Chr12 | 19961880 | 19961884 | 4 | |
| Deletion | Chr8 | 20902576 | 20902578 | 2 | |
| Deletion | Chr6 | 21220561 | 21220562 | 1 | |
| Deletion | Chr1 | 25340858 | 25340859 | 1 | OsKitaake01g245300 |
| Deletion | Chr4 | 30768300 | 30768304 | 4 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 25537567 | 25537570 | 2 | |
| Insertion | Chr6 | 17707646 | 17707649 | 2 | |
| Insertion | Chr5 | 12594783 | 12594785 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 12562245 | 13430394 | OsKitaake03g179400 |
| Inversion | Chr3 | 13155763 | 13430348 | 2 |
| Inversion | Chr3 | 16784828 | 16862823 | OsKitaake03g210900 |
| Inversion | Chr3 | 16784830 | 16862822 | OsKitaake03g210900 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 28194044 | Chr1 | 30019475 | OsKitaake03g291400 |
| Translocation | Chr3 | 28195987 | Chr1 | 30019475 | OsKitaake03g291400 |