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Mutant Information

Mutant Name	FN542-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN542-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4272611 T-C Hetero INTERGENIC
SBS Chr1 14031061 A-T Hetero INTERGENIC
SBS Chr1 24761070 T-A Hetero INTERGENIC
SBS Chr1 36506080 A-T Hetero INTERGENIC
SBS Chr1 43132847 A-T Hetero INTERGENIC
SBS Chr1 43132849 G-T Hetero INTERGENIC
SBS Chr2 20040228 A-T Hetero INTERGENIC
SBS Chr3 4592997 C-T Hetero INTERGENIC
SBS Chr3 6807100 A-T Hetero INTERGENIC
SBS Chr3 8581511 T-C Hetero INTERGENIC
SBS Chr3 22018147 C-T Hetero INTERGENIC
SBS Chr4 33959247 A-T Homo INTRON
SBS Chr5 6667170 T-A Hetero INTERGENIC
SBS Chr5 11511013 C-T Hetero INTERGENIC
SBS Chr6 14343171 C-T Homo INTERGENIC
SBS Chr6 16503164 T-A Homo INTERGENIC
SBS Chr7 14913251 T-C Hetero INTERGENIC
SBS Chr8 16444285 C-T Homo INTERGENIC
SBS Chr9 2714050 G-A Hetero INTERGENIC
SBS Chr10 6281475 C-T Homo INTERGENIC
SBS Chr10 9036461 C-T Hetero INTERGENIC
SBS Chr10 14902516 T-A Hetero INTERGENIC
SBS Chr10 14902519 T-A Hetero INTERGENIC
SBS Chr10 15072080 G-T Hetero UTR_3_PRIME
SBS Chr10 15072081 A-T Hetero UTR_3_PRIME
SBS Chr10 22493468 A-T Hetero INTERGENIC
SBS Chr11 27928183 G-T Hetero INTRON
SBS Chr12 1700310 A-G Hetero INTRON
SBS Chr12 3297425 T-G Hetero SYNONYMOUS_CODING
SBS Chr12 6434635 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 6779315 G-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3891005 3891007 2
Deletion Chr5 6630555 6630557 2
Deletion Chr2 9860001 9912000 51999 2
Deletion Chr11 11469695 11469699 4
Deletion Chr11 12596649 12596660 11
Deletion Chr7 19906403 19906404 1
Deletion Chr4 32241523 32241529 6
Deletion Chr3 34926362 34926375 13
Deletion Chr1 35923240 35923242 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 44213717 44213720 2
Insertion Chr5 745553 745556 2
Insertion Chr8 11486230 11486233 2
Insertion Chr12 10596599 10596602 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 4171824 4498522 OsKitaake06g057900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4272611	T-C	Hetero	INTERGENIC
SBS	Chr1	14031061	A-T	Hetero	INTERGENIC
SBS	Chr1	24761070	T-A	Hetero	INTERGENIC
SBS	Chr1	36506080	A-T	Hetero	INTERGENIC
SBS	Chr1	43132847	A-T	Hetero	INTERGENIC
SBS	Chr1	43132849	G-T	Hetero	INTERGENIC
SBS	Chr2	20040228	A-T	Hetero	INTERGENIC
SBS	Chr3	4592997	C-T	Hetero	INTERGENIC
SBS	Chr3	6807100	A-T	Hetero	INTERGENIC
SBS	Chr3	8581511	T-C	Hetero	INTERGENIC
SBS	Chr3	22018147	C-T	Hetero	INTERGENIC
SBS	Chr4	33959247	A-T	Homo	INTRON
SBS	Chr5	6667170	T-A	Hetero	INTERGENIC
SBS	Chr5	11511013	C-T	Hetero	INTERGENIC
SBS	Chr6	14343171	C-T	Homo	INTERGENIC
SBS	Chr6	16503164	T-A	Homo	INTERGENIC
SBS	Chr7	14913251	T-C	Hetero	INTERGENIC
SBS	Chr8	16444285	C-T	Homo	INTERGENIC
SBS	Chr9	2714050	G-A	Hetero	INTERGENIC
SBS	Chr10	6281475	C-T	Homo	INTERGENIC
SBS	Chr10	9036461	C-T	Hetero	INTERGENIC
SBS	Chr10	14902516	T-A	Hetero	INTERGENIC
SBS	Chr10	14902519	T-A	Hetero	INTERGENIC
SBS	Chr10	15072080	G-T	Hetero	UTR_3_PRIME
SBS	Chr10	15072081	A-T	Hetero	UTR_3_PRIME
SBS	Chr10	22493468	A-T	Hetero	INTERGENIC
SBS	Chr11	27928183	G-T	Hetero	INTRON
SBS	Chr12	1700310	A-G	Hetero	INTRON
SBS	Chr12	3297425	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	6434635	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	6779315	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3891005	3891007	2
Deletion	Chr5	6630555	6630557	2
Deletion	Chr2	9860001	9912000	51999	2
Deletion	Chr11	11469695	11469699	4
Deletion	Chr11	12596649	12596660	11
Deletion	Chr7	19906403	19906404	1
Deletion	Chr4	32241523	32241529	6
Deletion	Chr3	34926362	34926375	13
Deletion	Chr1	35923240	35923242	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4171824	4498522	OsKitaake06g057900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes