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Mutant Information

Mutant Name	FN543-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN543-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20534336 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g200800
SBS Chr1 23521881 A-T Hetero INTRON
SBS Chr1 23619841 G-T Hetero INTERGENIC
SBS Chr1 35285490 A-G Homo INTRON
SBS Chr1 38760224 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g414800
SBS Chr2 1889431 C-T Hetero INTERGENIC
SBS Chr2 11730621 T-G Hetero INTERGENIC
SBS Chr2 15232726 A-T Hetero INTERGENIC
SBS Chr3 3129011 T-A Hetero INTERGENIC
SBS Chr3 4156564 C-T Hetero INTERGENIC
SBS Chr3 10188799 C-A Hetero INTERGENIC
SBS Chr3 28525543 C-T Homo INTERGENIC
SBS Chr3 32158487 C-A Hetero UTR_5_PRIME
SBS Chr4 3193622 G-A Hetero INTERGENIC
SBS Chr4 7219670 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g036700
SBS Chr4 7973899 G-T Hetero INTERGENIC
SBS Chr4 9057938 C-T Hetero INTERGENIC
SBS Chr4 9432947 C-A Hetero INTERGENIC
SBS Chr4 15189862 T-C Hetero INTERGENIC
SBS Chr5 14093673 A-G Homo INTERGENIC
SBS Chr5 26436017 A-G Homo INTERGENIC
SBS Chr6 10454298 G-T Hetero INTERGENIC
SBS Chr6 14706249 G-A Hetero INTERGENIC
SBS Chr6 15329828 G-C Hetero INTERGENIC
SBS Chr6 18806565 C-T Hetero INTERGENIC
SBS Chr6 19446783 A-C Hetero INTERGENIC
SBS Chr6 20232300 C-T Hetero INTERGENIC
SBS Chr6 22782587 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g201200
SBS Chr6 22851696 C-T Hetero INTERGENIC
SBS Chr8 14268454 C-A Homo INTERGENIC
SBS Chr8 15354419 A-G Hetero INTERGENIC
SBS Chr8 15563830 A-G Hetero INTERGENIC
SBS Chr8 24422093 T-C Hetero INTERGENIC
SBS Chr9 2111588 A-C Homo INTRON
SBS Chr9 10868381 C-A Homo INTERGENIC
SBS Chr10 3976433 T-C Homo INTRON
SBS Chr10 10805749 G-A Homo INTERGENIC
SBS Chr11 1477389 G-A Hetero INTERGENIC
SBS Chr11 1477390 G-A Hetero INTERGENIC
SBS Chr11 14921068 G-A Homo INTERGENIC
SBS Chr11 24685109 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 574903 574904 1
Deletion Chr6 6145471 6145473 2
Deletion Chr9 10840211 10840230 19 OsKitaake09g067200
Deletion Chr1 12848001 13014000 165999 19
Deletion Chr9 13086001 13143000 56999 OsKitaake09g086700
Deletion Chr12 18808001 18907000 98999 4
Deletion Chr1 22725741 22725742 1
Deletion Chr11 23499864 23499941 77
Deletion Chr11 24069215 24069217 2
Deletion Chr7 25062608 25062612 4
Deletion Chr3 30769310 30769311 1
Deletion Chr6 30821001 30911000 89999 13
Deletion Chr2 31870383 31870385 2
Deletion Chr1 35763581 35763585 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 11317882 11317885 2
Insertion Chr3 10352596 10352599 2
Insertion Chr5 20774340 20774342 1
Insertion Chr7 10928174 10928181 6

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 30296970 30824088 OsKitaake06g284300
Inversion Chr6 30296977 30913791 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8573994 Chr1 24232846 OsKitaake01g233300
Translocation Chr9 8573997 Chr1 24229946
Translocation Chr2 11644612 Chr1 24229932 OsKitaake02g134100
Translocation Chr2 11644620 Chr1 24228377 OsKitaake02g134100
Translocation Chr11 19840239 Chr4 24957404 OsKitaake04g166700
Translocation Chr11 19840242 Chr4 24928429 OsKitaake04g166100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20534336	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g200800
SBS	Chr1	23521881	A-T	Hetero	INTRON
SBS	Chr1	23619841	G-T	Hetero	INTERGENIC
SBS	Chr1	35285490	A-G	Homo	INTRON
SBS	Chr1	38760224	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g414800
SBS	Chr2	1889431	C-T	Hetero	INTERGENIC
SBS	Chr2	11730621	T-G	Hetero	INTERGENIC
SBS	Chr2	15232726	A-T	Hetero	INTERGENIC
SBS	Chr3	3129011	T-A	Hetero	INTERGENIC
SBS	Chr3	4156564	C-T	Hetero	INTERGENIC
SBS	Chr3	10188799	C-A	Hetero	INTERGENIC
SBS	Chr3	28525543	C-T	Homo	INTERGENIC
SBS	Chr3	32158487	C-A	Hetero	UTR_5_PRIME
SBS	Chr4	3193622	G-A	Hetero	INTERGENIC
SBS	Chr4	7219670	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g036700
SBS	Chr4	7973899	G-T	Hetero	INTERGENIC
SBS	Chr4	9057938	C-T	Hetero	INTERGENIC
SBS	Chr4	9432947	C-A	Hetero	INTERGENIC
SBS	Chr4	15189862	T-C	Hetero	INTERGENIC
SBS	Chr5	14093673	A-G	Homo	INTERGENIC
SBS	Chr5	26436017	A-G	Homo	INTERGENIC
SBS	Chr6	10454298	G-T	Hetero	INTERGENIC
SBS	Chr6	14706249	G-A	Hetero	INTERGENIC
SBS	Chr6	15329828	G-C	Hetero	INTERGENIC
SBS	Chr6	18806565	C-T	Hetero	INTERGENIC
SBS	Chr6	19446783	A-C	Hetero	INTERGENIC
SBS	Chr6	20232300	C-T	Hetero	INTERGENIC
SBS	Chr6	22782587	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g201200
SBS	Chr6	22851696	C-T	Hetero	INTERGENIC
SBS	Chr8	14268454	C-A	Homo	INTERGENIC
SBS	Chr8	15354419	A-G	Hetero	INTERGENIC
SBS	Chr8	15563830	A-G	Hetero	INTERGENIC
SBS	Chr8	24422093	T-C	Hetero	INTERGENIC
SBS	Chr9	2111588	A-C	Homo	INTRON
SBS	Chr9	10868381	C-A	Homo	INTERGENIC
SBS	Chr10	3976433	T-C	Homo	INTRON
SBS	Chr10	10805749	G-A	Homo	INTERGENIC
SBS	Chr11	1477389	G-A	Hetero	INTERGENIC
SBS	Chr11	1477390	G-A	Hetero	INTERGENIC
SBS	Chr11	14921068	G-A	Homo	INTERGENIC
SBS	Chr11	24685109	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	574903	574904	1
Deletion	Chr6	6145471	6145473	2
Deletion	Chr9	10840211	10840230	19	OsKitaake09g067200
Deletion	Chr1	12848001	13014000	165999	19
Deletion	Chr9	13086001	13143000	56999	OsKitaake09g086700
Deletion	Chr12	18808001	18907000	98999	4
Deletion	Chr1	22725741	22725742	1
Deletion	Chr11	23499864	23499941	77
Deletion	Chr11	24069215	24069217	2
Deletion	Chr7	25062608	25062612	4
Deletion	Chr3	30769310	30769311	1
Deletion	Chr6	30821001	30911000	89999	13
Deletion	Chr2	31870383	31870385	2
Deletion	Chr1	35763581	35763585	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	30296970	30824088	OsKitaake06g284300
Inversion	Chr6	30296977	30913791	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes