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Mutant Information

Mutant Name	FN544-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN544-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1931547 C-T Hetero INTERGENIC
SBS Chr1 4346783 G-A Hetero SPLICE_SITE_REGION
SBS Chr1 19916240 C-T Hetero INTERGENIC
SBS Chr1 29017799 G-A Hetero INTERGENIC
SBS Chr1 36117807 C-T Hetero INTERGENIC
SBS Chr2 20318798 C-A Hetero INTRON
SBS Chr2 32202573 A-C Homo UTR_3_PRIME
SBS Chr3 1607586 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g022700
SBS Chr3 11628945 T-A Hetero INTERGENIC
SBS Chr3 15252501 C-T Hetero INTERGENIC
SBS Chr3 25760923 G-A Hetero INTERGENIC
SBS Chr3 27344308 C-T Homo UTR_3_PRIME
SBS Chr3 29764374 A-G Homo INTERGENIC
SBS Chr4 1653216 G-T Hetero UTR_3_PRIME
SBS Chr5 3309422 T-C Hetero INTERGENIC
SBS Chr5 3999299 A-G Hetero INTERGENIC
SBS Chr5 19388628 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 22401099 T-G Hetero UTR_3_PRIME
SBS Chr5 24108060 T-C Hetero INTERGENIC
SBS Chr6 23385764 T-A Hetero INTERGENIC
SBS Chr7 16548490 C-T Hetero INTERGENIC
SBS Chr7 16828241 A-T Hetero INTRON
SBS Chr7 17778769 G-A Hetero INTERGENIC
SBS Chr7 20323121 G-A Hetero INTERGENIC
SBS Chr8 7455882 G-A Hetero INTERGENIC
SBS Chr8 7455885 G-A Hetero INTERGENIC
SBS Chr8 8833397 T-C Hetero INTERGENIC
SBS Chr8 10719206 C-T Hetero INTERGENIC
SBS Chr8 15384448 T-G Hetero INTERGENIC
SBS Chr9 9092988 G-A Hetero INTERGENIC
SBS Chr10 11716077 G-T Hetero INTERGENIC
SBS Chr10 13397902 G-A Hetero INTERGENIC
SBS Chr10 22293313 C-G Hetero INTERGENIC
SBS Chr10 22788237 T-G Hetero UTR_3_PRIME
SBS Chr10 22962130 A-C Hetero INTRON
SBS Chr11 8311103 T-G Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1246001 1257000 10999 2
Deletion Chr2 3326684 3326686 2
Deletion Chr7 6406813 6406814 1
Deletion Chr11 8948213 8948220 7
Deletion Chr9 10774022 10774030 8
Deletion Chr11 16685545 16685547 2
Deletion Chr5 22861832 22861836 4 OsKitaake05g189200
Deletion Chr7 25833279 25833280 1
Deletion Chr1 27665310 27665311 1
Deletion Chr3 27725170 27725184 14
Deletion Chr4 31100323 31100328 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25051866 25051869 2
Insertion Chr6 23063056 23063058 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 29455990 29463585 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5734071 Chr7 6485453 OsKitaake12g069500
Translocation Chr12 5734080 Chr7 6490705 2
Translocation Chr11 27183252 Chr7 20101804
Translocation Chr11 27185616 Chr7 20101789

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1931547	C-T	Hetero	INTERGENIC
SBS	Chr1	4346783	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr1	19916240	C-T	Hetero	INTERGENIC
SBS	Chr1	29017799	G-A	Hetero	INTERGENIC
SBS	Chr1	36117807	C-T	Hetero	INTERGENIC
SBS	Chr2	20318798	C-A	Hetero	INTRON
SBS	Chr2	32202573	A-C	Homo	UTR_3_PRIME
SBS	Chr3	1607586	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g022700
SBS	Chr3	11628945	T-A	Hetero	INTERGENIC
SBS	Chr3	15252501	C-T	Hetero	INTERGENIC
SBS	Chr3	25760923	G-A	Hetero	INTERGENIC
SBS	Chr3	27344308	C-T	Homo	UTR_3_PRIME
SBS	Chr3	29764374	A-G	Homo	INTERGENIC
SBS	Chr4	1653216	G-T	Hetero	UTR_3_PRIME
SBS	Chr5	3309422	T-C	Hetero	INTERGENIC
SBS	Chr5	3999299	A-G	Hetero	INTERGENIC
SBS	Chr5	19388628	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	22401099	T-G	Hetero	UTR_3_PRIME
SBS	Chr5	24108060	T-C	Hetero	INTERGENIC
SBS	Chr6	23385764	T-A	Hetero	INTERGENIC
SBS	Chr7	16548490	C-T	Hetero	INTERGENIC
SBS	Chr7	16828241	A-T	Hetero	INTRON
SBS	Chr7	17778769	G-A	Hetero	INTERGENIC
SBS	Chr7	20323121	G-A	Hetero	INTERGENIC
SBS	Chr8	7455882	G-A	Hetero	INTERGENIC
SBS	Chr8	7455885	G-A	Hetero	INTERGENIC
SBS	Chr8	8833397	T-C	Hetero	INTERGENIC
SBS	Chr8	10719206	C-T	Hetero	INTERGENIC
SBS	Chr8	15384448	T-G	Hetero	INTERGENIC
SBS	Chr9	9092988	G-A	Hetero	INTERGENIC
SBS	Chr10	11716077	G-T	Hetero	INTERGENIC
SBS	Chr10	13397902	G-A	Hetero	INTERGENIC
SBS	Chr10	22293313	C-G	Hetero	INTERGENIC
SBS	Chr10	22788237	T-G	Hetero	UTR_3_PRIME
SBS	Chr10	22962130	A-C	Hetero	INTRON
SBS	Chr11	8311103	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1246001	1257000	10999	2
Deletion	Chr2	3326684	3326686	2
Deletion	Chr7	6406813	6406814	1
Deletion	Chr11	8948213	8948220	7
Deletion	Chr9	10774022	10774030	8
Deletion	Chr11	16685545	16685547	2
Deletion	Chr5	22861832	22861836	4	OsKitaake05g189200
Deletion	Chr7	25833279	25833280	1
Deletion	Chr1	27665310	27665311	1
Deletion	Chr3	27725170	27725184	14
Deletion	Chr4	31100323	31100328	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	29455990	29463585	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes