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| Mutant Information |
|---|
| Mutant Name | FN545-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN545-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1916519 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 25641603 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g249000 |
| SBS | Chr2 | 20606349 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 13650435 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 25431616 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 26656861 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 28579578 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 33663 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 7453572 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 14693269 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 12730974 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 14988556 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17606617 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 27590102 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 14896028 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 14896030 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 6165587 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 16989831 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 18634545 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 19305683 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 21536777 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23282204 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 7470145 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 6744865 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 11806268 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 13400241 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 17083839 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 18237303 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 29272010 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 5065536 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 24696056 | A-T | Homo | INTERGENIC |
Deletions: 24
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 1244504 | 1244508 | 4 | |
| Deletion | Chr8 | 2682970 | 2682973 | 3 | OsKitaake08g030200 |
| Deletion | Chr9 | 2746399 | 2746719 | 320 | |
| Deletion | Chr8 | 3657029 | 3657046 | 17 | |
| Deletion | Chr4 | 4453853 | 4453866 | 13 | |
| Deletion | Chr8 | 5323161 | 5323162 | 1 | |
| Deletion | Chr1 | 6358354 | 6358363 | 9 | |
| Deletion | Chr1 | 6426717 | 6426723 | 6 | |
| Deletion | Chr12 | 9079181 | 9079182 | 1 | |
| Deletion | Chr4 | 10449792 | 10450422 | 630 | |
| Deletion | Chr7 | 11212385 | 11212387 | 2 | |
| Deletion | Chr7 | 11361600 | 11361605 | 5 | |
| Deletion | Chr2 | 13094657 | 13094730 | 73 | |
| Deletion | Chr1 | 14487230 | 14487255 | 25 | |
| Deletion | Chr5 | 18562660 | 18562681 | 21 | |
| Deletion | Chr11 | 20717048 | 20717052 | 4 | OsKitaake11g163100 |
| Deletion | Chr10 | 22198851 | 22198852 | 1 | |
| Deletion | Chr2 | 23641281 | 23641287 | 6 | |
| Deletion | Chr2 | 24256179 | 24256182 | 3 | |
| Deletion | Chr12 | 25548139 | 25548140 | 1 | |
| Deletion | Chr8 | 25598107 | 25598109 | 2 | |
| Deletion | Chr7 | 29059881 | 29059882 | 1 | |
| Deletion | Chr3 | 30588465 | 30588468 | 3 | |
| Deletion | Chr4 | 33337699 | 33337703 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 8300886 | 8300889 | 2 | |
| Insertion | Chr5 | 12424107 | 12424109 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 1971875 | 2172227 | |
| Inversion | Chr10 | 6793973 | 7611143 | |
| Inversion | Chr10 | 6793984 | 7611151 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 1971896 | Chr1 | 10094916 | |
| Translocation | Chr8 | 1971973 | Chr1 | 10094922 |