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Mutant Information

Mutant Name	FN547-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN547-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 43170806 T-A Hetero INTERGENIC
SBS Chr2 50658 T-C Hetero INTERGENIC
SBS Chr2 14463110 C-T Hetero INTERGENIC
SBS Chr2 24280556 T-A Hetero INTERGENIC
SBS Chr3 19662041 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g229100
SBS Chr3 34854621 G-A Homo INTERGENIC
SBS Chr4 3907668 G-A Hetero INTERGENIC
SBS Chr4 15995774 T-G Homo INTERGENIC
SBS Chr4 17430939 T-A Hetero INTERGENIC
SBS Chr4 21708990 A-T Hetero INTERGENIC
SBS Chr4 33736130 C-T Hetero INTERGENIC
SBS Chr4 33736133 C-T Hetero INTERGENIC
SBS Chr5 3926918 A-T Hetero INTRON
SBS Chr5 4954185 G-T Hetero INTERGENIC
SBS Chr6 4436885 T-A Homo INTRON
SBS Chr6 23984391 G-C Hetero INTERGENIC
SBS Chr7 17744433 G-A Homo INTRON
SBS Chr7 26632950 G-T Homo INTRON
SBS Chr8 7402669 C-A Hetero INTERGENIC
SBS Chr8 12179159 G-T Hetero INTERGENIC
SBS Chr8 12810052 G-T Hetero INTERGENIC
SBS Chr8 12888943 C-T Hetero INTERGENIC
SBS Chr8 25773983 G-A Hetero INTRON
SBS Chr9 16016538 A-T Hetero INTERGENIC
SBS Chr9 19302524 C-T Homo INTRON
SBS Chr9 20172388 T-C Homo INTERGENIC
SBS Chr9 20379123 T-C Homo INTERGENIC
SBS Chr9 21675874 T-C Homo INTERGENIC
SBS Chr10 12528327 C-T Homo INTERGENIC
SBS Chr11 1102470 T-G Homo INTERGENIC
SBS Chr11 1289155 T-C Homo NON_SYNONYMOUS_CODING OsKitaake11g015700
SBS Chr12 12650460 G-A Hetero INTERGENIC
SBS Chr12 16645364 T-C Hetero INTERGENIC
SBS Chr12 20751681 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1515997 1516000 3
Deletion Chr12 1674213 1674215 2
Deletion Chr9 7456087 7456094 7
Deletion Chr9 13298954 13298963 9
Deletion Chr6 14091158 14091160 2
Deletion Chr11 15269869 15269871 2
Deletion Chr4 16953001 16985000 31999
Deletion Chr4 21913998 21914000 2
Deletion Chr3 31878996 31879008 12
Deletion Chr2 32464089 32464093 4 OsKitaake02g332200

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 21617785 21617788 2
Insertion Chr2 35509979 35509982 2
Insertion Chr7 4716924 4716927 2
Insertion Chr7 24524126 24524129 2
Insertion Chr12 575285 575293 7
Insertion Chr5 10944141 10944143 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	43170806	T-A	Hetero	INTERGENIC
SBS	Chr2	50658	T-C	Hetero	INTERGENIC
SBS	Chr2	14463110	C-T	Hetero	INTERGENIC
SBS	Chr2	24280556	T-A	Hetero	INTERGENIC
SBS	Chr3	19662041	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g229100
SBS	Chr3	34854621	G-A	Homo	INTERGENIC
SBS	Chr4	3907668	G-A	Hetero	INTERGENIC
SBS	Chr4	15995774	T-G	Homo	INTERGENIC
SBS	Chr4	17430939	T-A	Hetero	INTERGENIC
SBS	Chr4	21708990	A-T	Hetero	INTERGENIC
SBS	Chr4	33736130	C-T	Hetero	INTERGENIC
SBS	Chr4	33736133	C-T	Hetero	INTERGENIC
SBS	Chr5	3926918	A-T	Hetero	INTRON
SBS	Chr5	4954185	G-T	Hetero	INTERGENIC
SBS	Chr6	4436885	T-A	Homo	INTRON
SBS	Chr6	23984391	G-C	Hetero	INTERGENIC
SBS	Chr7	17744433	G-A	Homo	INTRON
SBS	Chr7	26632950	G-T	Homo	INTRON
SBS	Chr8	7402669	C-A	Hetero	INTERGENIC
SBS	Chr8	12179159	G-T	Hetero	INTERGENIC
SBS	Chr8	12810052	G-T	Hetero	INTERGENIC
SBS	Chr8	12888943	C-T	Hetero	INTERGENIC
SBS	Chr8	25773983	G-A	Hetero	INTRON
SBS	Chr9	16016538	A-T	Hetero	INTERGENIC
SBS	Chr9	19302524	C-T	Homo	INTRON
SBS	Chr9	20172388	T-C	Homo	INTERGENIC
SBS	Chr9	20379123	T-C	Homo	INTERGENIC
SBS	Chr9	21675874	T-C	Homo	INTERGENIC
SBS	Chr10	12528327	C-T	Homo	INTERGENIC
SBS	Chr11	1102470	T-G	Homo	INTERGENIC
SBS	Chr11	1289155	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g015700
SBS	Chr12	12650460	G-A	Hetero	INTERGENIC
SBS	Chr12	16645364	T-C	Hetero	INTERGENIC
SBS	Chr12	20751681	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1515997	1516000	3
Deletion	Chr12	1674213	1674215	2
Deletion	Chr9	7456087	7456094	7
Deletion	Chr9	13298954	13298963	9
Deletion	Chr6	14091158	14091160	2
Deletion	Chr11	15269869	15269871	2
Deletion	Chr4	16953001	16985000	31999
Deletion	Chr4	21913998	21914000	2
Deletion	Chr3	31878996	31879008	12
Deletion	Chr2	32464089	32464093	4	OsKitaake02g332200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes