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Mutant Information

Mutant Name	FN548-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN548-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1848132 A-T Hetero INTERGENIC
SBS Chr1 9676853 A-T Hetero INTERGENIC
SBS Chr1 16440211 A-G Homo INTERGENIC
SBS Chr1 32196587 T-A Hetero INTERGENIC
SBS Chr1 38294118 A-G Hetero INTERGENIC
SBS Chr1 43399662 G-A Hetero INTERGENIC
SBS Chr1 43399663 T-A Hetero INTERGENIC
SBS Chr2 24152388 G-A Hetero INTERGENIC
SBS Chr2 28430673 T-A Hetero INTERGENIC
SBS Chr2 28430674 C-A Hetero INTERGENIC
SBS Chr3 25911943 T-C Homo INTERGENIC
SBS Chr3 31581611 C-T Hetero INTERGENIC
SBS Chr3 32938063 C-T Hetero UTR_3_PRIME
SBS Chr4 9885052 G-A Homo INTERGENIC
SBS Chr4 18767554 G-T Hetero INTERGENIC
SBS Chr4 24549603 G-T Homo INTERGENIC
SBS Chr5 19572854 G-C Hetero INTERGENIC
SBS Chr6 1744908 G-C Homo INTERGENIC
SBS Chr6 2626657 A-T Homo INTRON
SBS Chr6 13823882 T-C Hetero INTERGENIC
SBS Chr6 13823885 A-T Hetero INTERGENIC
SBS Chr6 15354272 C-T Hetero INTERGENIC
SBS Chr6 22088765 G-A Hetero INTERGENIC
SBS Chr7 6386938 C-A Homo INTERGENIC
SBS Chr8 2577412 C-T Hetero INTERGENIC
SBS Chr8 3081130 C-A Hetero UTR_3_PRIME
SBS Chr8 11518747 C-G Hetero UTR_3_PRIME
SBS Chr9 4225249 C-T Hetero INTERGENIC
SBS Chr9 5614139 A-G Hetero INTERGENIC
SBS Chr9 12429147 C-A Homo INTERGENIC
SBS Chr10 19744920 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g146400
SBS Chr11 13436760 C-T Homo INTERGENIC
SBS Chr11 17222305 G-A Homo INTERGENIC
SBS Chr11 23273207 T-C Homo INTERGENIC
SBS Chr12 4714381 T-A Hetero INTERGENIC
SBS Chr12 20288682 T-A Homo SPLICE_SITE_REGION
SBS Chr12 26409767 A-T Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 51001 164000 112999 3
Deletion Chr7 168281 168283 2
Deletion Chr11 763001 782000 18999 5
Deletion Chr5 2430977 2430978 1
Deletion Chr9 3051001 3069000 17999 OsKitaake09g016300
Deletion Chr10 5098655 5098656 1
Deletion Chr12 5389724 5389726 2
Deletion Chr5 7498597 7498607 10
Deletion Chr6 7756863 7756874 11
Deletion Chr12 11674297 11674298 1
Deletion Chr5 12470303 12470326 23
Deletion Chr12 12583001 12619000 35999 5
Deletion Chr12 13180001 13202000 21999 8
Deletion Chr7 13721001 13725000 3999
Deletion Chr10 16752001 16769000 16999 OsKitaake10g114300
Deletion Chr7 19316606 19316614 8 OsKitaake07g156500
Deletion Chr1 20420188 20420192 4
Deletion Chr2 21277826 21277832 6 OsKitaake02g205200
Deletion Chr8 21587762 21587774 12
Deletion Chr3 23507911 23507913 2
Deletion Chr1 24656589 24656591 2
Deletion Chr2 25973681 25973685 4
Deletion Chr4 28102802 28102803 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25385548 25385551 2
Insertion Chr5 30224202 30224204 1
Insertion Chr8 2708292 2708294 1
Insertion Chr10 4427109 4427111 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 434751 645887 OsKitaake01g006100
Inversion Chr1 43416956 43588717 OsKitaake01g480600

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 16755913 Chr8 16488718 OsKitaake08g126800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1848132	A-T	Hetero	INTERGENIC
SBS	Chr1	9676853	A-T	Hetero	INTERGENIC
SBS	Chr1	16440211	A-G	Homo	INTERGENIC
SBS	Chr1	32196587	T-A	Hetero	INTERGENIC
SBS	Chr1	38294118	A-G	Hetero	INTERGENIC
SBS	Chr1	43399662	G-A	Hetero	INTERGENIC
SBS	Chr1	43399663	T-A	Hetero	INTERGENIC
SBS	Chr2	24152388	G-A	Hetero	INTERGENIC
SBS	Chr2	28430673	T-A	Hetero	INTERGENIC
SBS	Chr2	28430674	C-A	Hetero	INTERGENIC
SBS	Chr3	25911943	T-C	Homo	INTERGENIC
SBS	Chr3	31581611	C-T	Hetero	INTERGENIC
SBS	Chr3	32938063	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	9885052	G-A	Homo	INTERGENIC
SBS	Chr4	18767554	G-T	Hetero	INTERGENIC
SBS	Chr4	24549603	G-T	Homo	INTERGENIC
SBS	Chr5	19572854	G-C	Hetero	INTERGENIC
SBS	Chr6	1744908	G-C	Homo	INTERGENIC
SBS	Chr6	2626657	A-T	Homo	INTRON
SBS	Chr6	13823882	T-C	Hetero	INTERGENIC
SBS	Chr6	13823885	A-T	Hetero	INTERGENIC
SBS	Chr6	15354272	C-T	Hetero	INTERGENIC
SBS	Chr6	22088765	G-A	Hetero	INTERGENIC
SBS	Chr7	6386938	C-A	Homo	INTERGENIC
SBS	Chr8	2577412	C-T	Hetero	INTERGENIC
SBS	Chr8	3081130	C-A	Hetero	UTR_3_PRIME
SBS	Chr8	11518747	C-G	Hetero	UTR_3_PRIME
SBS	Chr9	4225249	C-T	Hetero	INTERGENIC
SBS	Chr9	5614139	A-G	Hetero	INTERGENIC
SBS	Chr9	12429147	C-A	Homo	INTERGENIC
SBS	Chr10	19744920	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g146400
SBS	Chr11	13436760	C-T	Homo	INTERGENIC
SBS	Chr11	17222305	G-A	Homo	INTERGENIC
SBS	Chr11	23273207	T-C	Homo	INTERGENIC
SBS	Chr12	4714381	T-A	Hetero	INTERGENIC
SBS	Chr12	20288682	T-A	Homo	SPLICE_SITE_REGION
SBS	Chr12	26409767	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	51001	164000	112999	3
Deletion	Chr7	168281	168283	2
Deletion	Chr11	763001	782000	18999	5
Deletion	Chr5	2430977	2430978	1
Deletion	Chr9	3051001	3069000	17999	OsKitaake09g016300
Deletion	Chr10	5098655	5098656	1
Deletion	Chr12	5389724	5389726	2
Deletion	Chr5	7498597	7498607	10
Deletion	Chr6	7756863	7756874	11
Deletion	Chr12	11674297	11674298	1
Deletion	Chr5	12470303	12470326	23
Deletion	Chr12	12583001	12619000	35999	5
Deletion	Chr12	13180001	13202000	21999	8
Deletion	Chr7	13721001	13725000	3999
Deletion	Chr10	16752001	16769000	16999	OsKitaake10g114300
Deletion	Chr7	19316606	19316614	8	OsKitaake07g156500
Deletion	Chr1	20420188	20420192	4
Deletion	Chr2	21277826	21277832	6	OsKitaake02g205200
Deletion	Chr8	21587762	21587774	12
Deletion	Chr3	23507911	23507913	2
Deletion	Chr1	24656589	24656591	2
Deletion	Chr2	25973681	25973685	4
Deletion	Chr4	28102802	28102803	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	434751	645887	OsKitaake01g006100
Inversion	Chr1	43416956	43588717	OsKitaake01g480600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes