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Mutant Information

Mutant Name	FN549-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN549-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14891703 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g141900
SBS Chr1 40911735 T-G Homo INTERGENIC
SBS Chr1 42787568 C-T Homo INTERGENIC
SBS Chr2 31786925 G-A Hetero INTERGENIC
SBS Chr2 36860939 T-A Hetero INTERGENIC
SBS Chr3 6743903 G-A Hetero INTERGENIC
SBS Chr3 10006494 T-A Hetero SPLICE_SITE_REGION
SBS Chr3 29321761 G-C Hetero INTERGENIC
SBS Chr4 3737956 G-A Hetero INTERGENIC
SBS Chr4 12658589 G-A Hetero INTERGENIC
SBS Chr4 13865758 C-T Hetero INTERGENIC
SBS Chr5 3447891 C-G Homo NON_SYNONYMOUS_CODING OsKitaake05g041501
SBS Chr5 7382522 C-G Homo INTERGENIC
SBS Chr5 13369434 G-A Homo INTERGENIC
SBS Chr6 6601054 G-C Homo INTERGENIC
SBS Chr6 8078946 G-A Homo INTERGENIC
SBS Chr6 8818161 T-C Homo INTERGENIC
SBS Chr6 23209758 T-C Homo NON_SYNONYMOUS_CODING OsKitaake06g204400
SBS Chr6 27948212 A-G Hetero INTERGENIC
SBS Chr7 22164728 C-T Hetero INTERGENIC
SBS Chr7 23310614 A-T Hetero INTERGENIC
SBS Chr9 4274431 G-C Hetero INTERGENIC
SBS Chr9 4577601 A-G Hetero INTERGENIC
SBS Chr11 22939417 T-C Hetero INTERGENIC
SBS Chr12 5563534 A-T Homo INTERGENIC
SBS Chr12 14753023 G-A Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 4939816 4939823 7
Deletion Chr6 5861543 5861546 3
Deletion Chr11 5911507 5911508 1
Deletion Chr5 5972681 5972698 17
Deletion Chr5 7748570 7748571 1
Deletion Chr6 8220596 8220597 1
Deletion Chr5 8594361 8594362 1
Deletion Chr12 10865625 10865638 13
Deletion Chr10 16175629 16175635 6
Deletion Chr2 17889327 17889343 16
Deletion Chr3 18829939 18829947 8
Deletion Chr11 18909115 18909116 1
Deletion Chr7 22673447 22673451 4
Deletion Chr11 24106001 24127000 20999 OsKitaake11g193900
Deletion Chr4 25929548 25929550 2
Deletion Chr6 27380466 27380476 10
Deletion Chr1 32989367 32989369 2
Deletion Chr2 37144011 37144016 5
Deletion Chr1 37862667 37862671 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 20215482 20215485 2
Insertion Chr10 5135594 5135597 2
Insertion Chr11 17818495 17818498 2
Insertion Chr11 24049691 24049695 3
Insertion Chr12 4918134 4918141 6

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 24066206 24107609
Inversion Chr11 24070698 24128323 OsKitaake11g193900

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 10764998 Chr8 19662511
Translocation Chr12 10777586 Chr8 19662507 OsKitaake12g100100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14891703	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g141900
SBS	Chr1	40911735	T-G	Homo	INTERGENIC
SBS	Chr1	42787568	C-T	Homo	INTERGENIC
SBS	Chr2	31786925	G-A	Hetero	INTERGENIC
SBS	Chr2	36860939	T-A	Hetero	INTERGENIC
SBS	Chr3	6743903	G-A	Hetero	INTERGENIC
SBS	Chr3	10006494	T-A	Hetero	SPLICE_SITE_REGION
SBS	Chr3	29321761	G-C	Hetero	INTERGENIC
SBS	Chr4	3737956	G-A	Hetero	INTERGENIC
SBS	Chr4	12658589	G-A	Hetero	INTERGENIC
SBS	Chr4	13865758	C-T	Hetero	INTERGENIC
SBS	Chr5	3447891	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g041501
SBS	Chr5	7382522	C-G	Homo	INTERGENIC
SBS	Chr5	13369434	G-A	Homo	INTERGENIC
SBS	Chr6	6601054	G-C	Homo	INTERGENIC
SBS	Chr6	8078946	G-A	Homo	INTERGENIC
SBS	Chr6	8818161	T-C	Homo	INTERGENIC
SBS	Chr6	23209758	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g204400
SBS	Chr6	27948212	A-G	Hetero	INTERGENIC
SBS	Chr7	22164728	C-T	Hetero	INTERGENIC
SBS	Chr7	23310614	A-T	Hetero	INTERGENIC
SBS	Chr9	4274431	G-C	Hetero	INTERGENIC
SBS	Chr9	4577601	A-G	Hetero	INTERGENIC
SBS	Chr11	22939417	T-C	Hetero	INTERGENIC
SBS	Chr12	5563534	A-T	Homo	INTERGENIC
SBS	Chr12	14753023	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	4939816	4939823	7
Deletion	Chr6	5861543	5861546	3
Deletion	Chr11	5911507	5911508	1
Deletion	Chr5	5972681	5972698	17
Deletion	Chr5	7748570	7748571	1
Deletion	Chr6	8220596	8220597	1
Deletion	Chr5	8594361	8594362	1
Deletion	Chr12	10865625	10865638	13
Deletion	Chr10	16175629	16175635	6
Deletion	Chr2	17889327	17889343	16
Deletion	Chr3	18829939	18829947	8
Deletion	Chr11	18909115	18909116	1
Deletion	Chr7	22673447	22673451	4
Deletion	Chr11	24106001	24127000	20999	OsKitaake11g193900
Deletion	Chr4	25929548	25929550	2
Deletion	Chr6	27380466	27380476	10
Deletion	Chr1	32989367	32989369	2
Deletion	Chr2	37144011	37144016	5
Deletion	Chr1	37862667	37862671	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	24066206	24107609
Inversion	Chr11	24070698	24128323	OsKitaake11g193900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes