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Mutant Information

Mutant Name	FN550-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN550-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12365240 G-T Hetero INTERGENIC
SBS Chr1 21616904 C-A Homo INTERGENIC
SBS Chr2 12759330 G-T Homo INTRON
SBS Chr2 22211625 T-C Hetero INTERGENIC
SBS Chr2 26876118 C-T Hetero INTRON
SBS Chr2 31637187 G-T Homo INTERGENIC
SBS Chr2 33805684 A-G Hetero UTR_3_PRIME
SBS Chr2 35495757 G-T Hetero INTERGENIC
SBS Chr3 23511412 C-A Homo INTERGENIC
SBS Chr3 25176138 T-C Hetero INTERGENIC
SBS Chr3 34425196 C-T Homo INTERGENIC
SBS Chr3 35834291 A-G Hetero UTR_3_PRIME
SBS Chr4 2839253 C-T Hetero INTERGENIC
SBS Chr4 22504685 C-T Homo INTERGENIC
SBS Chr4 23333212 G-T Homo INTERGENIC
SBS Chr4 23333213 A-G Homo INTERGENIC
SBS Chr4 28087754 A-G Homo INTERGENIC
SBS Chr5 29186348 G-T Homo INTERGENIC
SBS Chr6 1146779 G-A Hetero INTERGENIC
SBS Chr6 1756270 A-T Hetero INTERGENIC
SBS Chr6 10962718 C-G Hetero INTERGENIC
SBS Chr6 19988452 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g179400
SBS Chr6 30106568 A-T Homo INTERGENIC
SBS Chr7 6014857 C-T Hetero INTERGENIC
SBS Chr7 10529822 C-T Homo INTERGENIC
SBS Chr7 16757365 C-A Hetero INTERGENIC
SBS Chr7 16757367 G-A Hetero INTERGENIC
SBS Chr7 27719125 C-T Homo INTERGENIC
SBS Chr8 7787056 A-T Homo INTERGENIC
SBS Chr8 13583326 G-A Homo INTERGENIC
SBS Chr9 2159811 G-A Hetero INTERGENIC
SBS Chr9 19416416 T-C Hetero INTRON
SBS Chr9 21210756 G-A Hetero INTERGENIC
SBS Chr9 21210757 T-A Hetero INTERGENIC
SBS Chr10 7707566 G-C Homo INTERGENIC
SBS Chr10 9032629 G-A Hetero INTERGENIC
SBS Chr11 451114 G-A Hetero INTERGENIC
SBS Chr11 1936563 T-C Hetero UTR_3_PRIME
SBS Chr11 7076595 A-T Homo INTERGENIC
SBS Chr11 15296278 C-T Hetero INTERGENIC
SBS Chr11 27482773 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g223900
SBS Chr12 10433076 G-A Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3102001 3128000 25999 4
Deletion Chr3 8278522 8278523 1
Deletion Chr9 13335960 13335962 2
Deletion Chr8 13816426 13816434 8
Deletion Chr10 16105554 16105565 11
Deletion Chr5 16803344 16803360 16
Deletion Chr6 20285041 20285047 6
Deletion Chr9 22247724 22247726 2
Deletion Chr5 23032132 23032133 1
Deletion Chr8 27868475 27868481 6
Deletion Chr4 32708100 32708106 6
Deletion Chr1 37335321 37335322 1 OsKitaake01g398401
Deletion Chr1 42062363 42062364 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 725083 725086 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 29409812 29551860

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12365240	G-T	Hetero	INTERGENIC
SBS	Chr1	21616904	C-A	Homo	INTERGENIC
SBS	Chr2	12759330	G-T	Homo	INTRON
SBS	Chr2	22211625	T-C	Hetero	INTERGENIC
SBS	Chr2	26876118	C-T	Hetero	INTRON
SBS	Chr2	31637187	G-T	Homo	INTERGENIC
SBS	Chr2	33805684	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	35495757	G-T	Hetero	INTERGENIC
SBS	Chr3	23511412	C-A	Homo	INTERGENIC
SBS	Chr3	25176138	T-C	Hetero	INTERGENIC
SBS	Chr3	34425196	C-T	Homo	INTERGENIC
SBS	Chr3	35834291	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	2839253	C-T	Hetero	INTERGENIC
SBS	Chr4	22504685	C-T	Homo	INTERGENIC
SBS	Chr4	23333212	G-T	Homo	INTERGENIC
SBS	Chr4	23333213	A-G	Homo	INTERGENIC
SBS	Chr4	28087754	A-G	Homo	INTERGENIC
SBS	Chr5	29186348	G-T	Homo	INTERGENIC
SBS	Chr6	1146779	G-A	Hetero	INTERGENIC
SBS	Chr6	1756270	A-T	Hetero	INTERGENIC
SBS	Chr6	10962718	C-G	Hetero	INTERGENIC
SBS	Chr6	19988452	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g179400
SBS	Chr6	30106568	A-T	Homo	INTERGENIC
SBS	Chr7	6014857	C-T	Hetero	INTERGENIC
SBS	Chr7	10529822	C-T	Homo	INTERGENIC
SBS	Chr7	16757365	C-A	Hetero	INTERGENIC
SBS	Chr7	16757367	G-A	Hetero	INTERGENIC
SBS	Chr7	27719125	C-T	Homo	INTERGENIC
SBS	Chr8	7787056	A-T	Homo	INTERGENIC
SBS	Chr8	13583326	G-A	Homo	INTERGENIC
SBS	Chr9	2159811	G-A	Hetero	INTERGENIC
SBS	Chr9	19416416	T-C	Hetero	INTRON
SBS	Chr9	21210756	G-A	Hetero	INTERGENIC
SBS	Chr9	21210757	T-A	Hetero	INTERGENIC
SBS	Chr10	7707566	G-C	Homo	INTERGENIC
SBS	Chr10	9032629	G-A	Hetero	INTERGENIC
SBS	Chr11	451114	G-A	Hetero	INTERGENIC
SBS	Chr11	1936563	T-C	Hetero	UTR_3_PRIME
SBS	Chr11	7076595	A-T	Homo	INTERGENIC
SBS	Chr11	15296278	C-T	Hetero	INTERGENIC
SBS	Chr11	27482773	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g223900
SBS	Chr12	10433076	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3102001	3128000	25999	4
Deletion	Chr3	8278522	8278523	1
Deletion	Chr9	13335960	13335962	2
Deletion	Chr8	13816426	13816434	8
Deletion	Chr10	16105554	16105565	11
Deletion	Chr5	16803344	16803360	16
Deletion	Chr6	20285041	20285047	6
Deletion	Chr9	22247724	22247726	2
Deletion	Chr5	23032132	23032133	1
Deletion	Chr8	27868475	27868481	6
Deletion	Chr4	32708100	32708106	6
Deletion	Chr1	37335321	37335322	1	OsKitaake01g398401
Deletion	Chr1	42062363	42062364	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	29409812	29551860

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes