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| Mutant Information |
|---|
| Mutant Name | FN551-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN551-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 28042758 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 33865494 | A-C | Homo | INTERGENIC | |
| SBS | Chr2 | 3068154 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 3156573 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 16876714 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 19193377 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 12971879 | T-G | Homo | INTRON | |
| SBS | Chr4 | 15915039 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 16016876 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 29686897 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 1325110 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 11528867 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 22786092 | G-C | Homo | INTERGENIC | |
| SBS | Chr6 | 17804463 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 19895858 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 23814062 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 15778047 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 1938205 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 2316900 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 10502642 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 15381480 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 8096646 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 20757435 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 16723173 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18248962 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18652534 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 23009286 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1891920 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g029200 |
| SBS | Chr12 | 20444374 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 22295972 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 23532071 | C-T | Hetero | UTR_3_PRIME |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 1259990 | 1259996 | 6 | |
| Deletion | Chr9 | 3662998 | 3663007 | 9 | OsKitaake09g019200 |
| Deletion | Chr11 | 5243001 | 5286000 | 42999 | 6 |
| Deletion | Chr10 | 8354999 | 8355002 | 3 | |
| Deletion | Chr9 | 13704452 | 13704453 | 1 | |
| Deletion | Chr7 | 16171310 | 16171316 | 6 | |
| Deletion | Chr8 | 18967804 | 18967811 | 7 | |
| Deletion | Chr9 | 22140376 | 22140378 | 2 | |
| Deletion | Chr6 | 26801210 | 26801212 | 2 | |
| Deletion | Chr11 | 28872468 | 28872469 | 1 | OsKitaake11g236400 |
| Deletion | Chr1 | 34619820 | 34619824 | 4 |
Insertions: 5
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 5178617 | 5246287 | OsKitaake11g066000 |
| Inversion | Chr6 | 5407267 | 5840946 | OsKitaake06g076800 |
| Inversion | Chr6 | 5407648 | 5840956 | OsKitaake06g076800 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 5407276 | Chr1 | 10388289 | OsKitaake01g130300 |
| Translocation | Chr6 | 5407617 | Chr1 | 10388291 | OsKitaake01g130300 |