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| Mutant Information |
|---|
| Mutant Name | FN558-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN558-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 26781954 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 28892930 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 32144422 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g328500 |
| SBS | Chr3 | 10816398 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 10816399 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18613437 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 25730316 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g271300 |
| SBS | Chr4 | 4809141 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 5625987 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 10135457 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 22628054 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 29931870 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 23901994 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 3350657 | G-A | Homo | INTRON | |
| SBS | Chr6 | 4930832 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 15575723 | A-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 18348906 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 10664184 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 12009302 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 458514 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 14354877 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g120100 |
| SBS | Chr11 | 28530579 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 2919292 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 10276218 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 18623506 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 26390667 | A-G | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 1489111 | 1489117 | 6 | |
| Deletion | Chr8 | 15537363 | 15537364 | 1 | |
| Deletion | Chr10 | 15865507 | 15865828 | 321 | OsKitaake10g103600 |
| Deletion | Chr8 | 17264253 | 17264339 | 86 | |
| Deletion | Chr10 | 20239395 | 20239397 | 2 | |
| Deletion | Chr1 | 27189761 | 27189774 | 13 | |
| Deletion | Chr1 | 41466522 | 41466524 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 13087880 | 13087883 | 2 | |
| Insertion | Chr4 | 20651275 | 20651278 | 2 | |
| Insertion | Chr6 | 3314139 | 3314142 | 2 | |
| Insertion | Chr7 | 4976579 | 4976582 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 28890178 | 28970760 | OsKitaake01g281300 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 16057868 | Chr1 | 28890168 | |
| Translocation | Chr11 | 16064447 | Chr1 | 28970754 | OsKitaake01g281300 |