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| Mutant Information |
|---|
| Mutant Name | FN559-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN559-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 20
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22916260 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 24212573 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 22742451 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 31036145 | G-C | Hetero | INTRON | |
| SBS | Chr4 | 9394622 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 9394623 | A-C | Homo | INTERGENIC | |
| SBS | Chr5 | 26659978 | T-C | Homo | INTRON | |
| SBS | Chr6 | 156517 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g000100 |
| SBS | Chr6 | 2986308 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 9923060 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 21688097 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 29359945 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 11115975 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 15102410 | T-G | Homo | INTRON | |
| SBS | Chr9 | 2871767 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 2978659 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 7500546 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8036928 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7806071 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 24877188 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g202300 |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 82182 | 82184 | 2 | |
| Deletion | Chr2 | 2562001 | 2571000 | 8999 | OsKitaake02g036500 |
| Deletion | Chr2 | 3878001 | 3901000 | 22999 | |
| Deletion | Chr9 | 5903001 | 5915000 | 11999 | |
| Deletion | Chr3 | 7356859 | 7356861 | 2 | |
| Deletion | Chr1 | 8784001 | 8799000 | 14999 | |
| Deletion | Chr12 | 9730001 | 9753000 | 22999 | |
| Deletion | Chr1 | 17283622 | 17284286 | 664 | |
| Deletion | Chr1 | 18014635 | 18014720 | 85 | |
| Deletion | Chr6 | 21199001 | 21213000 | 13999 | |
| Deletion | Chr3 | 25935725 | 25935871 | 146 | |
| Deletion | Chr8 | 26773001 | 26784000 | 10999 | |
| Deletion | Chr3 | 27376758 | 27376759 | 1 | OsKitaake03g282400 |
| Deletion | Chr5 | 29918840 | 29918942 | 102 | |
| Deletion | Chr3 | 36170001 | 36190000 | 19999 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 10698652 | 10698654 | 1 | |
| Insertion | Chr8 | 6758453 | 6758456 | 2 | |
| Insertion | Chr1 | 17265136 | 17265138 | 1 | |
| Insertion | Chr10 | 9205970 | 9205972 | 1 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 13931057 | Chr10 | 8624140 |