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Mutant Information

Mutant Name	FN561-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN561-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2364584 G-A Homo INTERGENIC
SBS Chr1 26153284 T-A Hetero INTERGENIC
SBS Chr1 28926420 G-A Hetero INTERGENIC
SBS Chr1 30755180 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g304500
SBS Chr1 43119742 G-A Hetero INTERGENIC
SBS Chr2 7807348 A-C Homo INTERGENIC
SBS Chr2 17972831 T-G Homo INTRON
SBS Chr3 4613188 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g066700
SBS Chr3 5008822 G-A Hetero INTERGENIC
SBS Chr3 21519194 A-G Hetero INTERGENIC
SBS Chr4 3791922 C-T Hetero INTERGENIC
SBS Chr4 20970154 G-T Hetero INTERGENIC
SBS Chr4 24382426 C-T Homo INTERGENIC
SBS Chr4 35519390 G-A Hetero INTRON
SBS Chr4 35951786 T-A Hetero INTERGENIC
SBS Chr4 36805294 C-T Hetero INTERGENIC
SBS Chr5 2546197 T-G Homo INTERGENIC
SBS Chr6 3084721 T-C Hetero INTERGENIC
SBS Chr6 7051739 T-A Hetero INTERGENIC
SBS Chr6 19215302 C-T Hetero INTERGENIC
SBS Chr8 3378505 C-T Hetero INTERGENIC
SBS Chr8 5454849 A-T Homo INTERGENIC
SBS Chr8 7774728 T-A Homo INTERGENIC
SBS Chr8 9453845 C-T Hetero INTERGENIC
SBS Chr8 11181895 C-T Hetero INTERGENIC
SBS Chr10 4300335 A-C Hetero INTERGENIC
SBS Chr10 7302899 C-T Hetero INTERGENIC
SBS Chr10 12934959 T-C Hetero INTERGENIC
SBS Chr10 16383505 A-G Hetero INTRON
SBS Chr10 16383506 G-T Hetero INTRON
SBS Chr10 16383507 G-A Hetero INTRON
SBS Chr11 29073510 T-C Homo INTERGENIC
SBS Chr12 7754287 C-A Homo INTERGENIC
SBS Chr12 10464181 A-T Homo INTERGENIC
SBS Chr12 17547742 T-C Homo INTERGENIC
SBS Chr12 22448156 C-A Hetero INTERGENIC
SBS Chr12 24555643 G-T Homo INTRON
SBS Chr12 26548935 A-T Hetero INTERGENIC
SBS Chr12 26826734 C-A Homo INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2429329 2429331 2
Deletion Chr4 3416809 3416811 2
Deletion Chr7 3721743 3721747 4
Deletion Chr5 10923001 10948000 24999
Deletion Chr4 24495786 24495792 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27872045 27872048 2
Insertion Chr1 36723632 36723635 2
Insertion Chr7 28346703 28346706 2
Insertion Chr7 12005457 12005459 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 14621641 14962616
Inversion Chr12 17189373 17545003
Inversion Chr11 23803956 23833484 OsKitaake11g190600
Inversion Chr11 23804611 23833493 OsKitaake11g190600

Translocations: 10

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 6896938 Chr7 15442884
Translocation Chr12 14682910 Chr9 15002168
Translocation Chr12 14691590 Chr9 15002162
Translocation Chr12 17189373 Chr6 18307409
Translocation Chr10 17825048 Chr1 14621581 OsKitaake10g123600
Translocation Chr10 17825049 Chr1 14550751 OsKitaake10g123600
Translocation Chr6 18303374 Chr1 18365553 2
Translocation Chr6 18306163 Chr1 18365549 2
Translocation Chr11 23803966 Chr10 20198978 OsKitaake11g190600
Translocation Chr11 23804595 Chr10 20198969 OsKitaake11g190600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2364584	G-A	Homo	INTERGENIC
SBS	Chr1	26153284	T-A	Hetero	INTERGENIC
SBS	Chr1	28926420	G-A	Hetero	INTERGENIC
SBS	Chr1	30755180	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g304500
SBS	Chr1	43119742	G-A	Hetero	INTERGENIC
SBS	Chr2	7807348	A-C	Homo	INTERGENIC
SBS	Chr2	17972831	T-G	Homo	INTRON
SBS	Chr3	4613188	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g066700
SBS	Chr3	5008822	G-A	Hetero	INTERGENIC
SBS	Chr3	21519194	A-G	Hetero	INTERGENIC
SBS	Chr4	3791922	C-T	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Hetero	INTERGENIC
SBS	Chr4	24382426	C-T	Homo	INTERGENIC
SBS	Chr4	35519390	G-A	Hetero	INTRON
SBS	Chr4	35951786	T-A	Hetero	INTERGENIC
SBS	Chr4	36805294	C-T	Hetero	INTERGENIC
SBS	Chr5	2546197	T-G	Homo	INTERGENIC
SBS	Chr6	3084721	T-C	Hetero	INTERGENIC
SBS	Chr6	7051739	T-A	Hetero	INTERGENIC
SBS	Chr6	19215302	C-T	Hetero	INTERGENIC
SBS	Chr8	3378505	C-T	Hetero	INTERGENIC
SBS	Chr8	5454849	A-T	Homo	INTERGENIC
SBS	Chr8	7774728	T-A	Homo	INTERGENIC
SBS	Chr8	9453845	C-T	Hetero	INTERGENIC
SBS	Chr8	11181895	C-T	Hetero	INTERGENIC
SBS	Chr10	4300335	A-C	Hetero	INTERGENIC
SBS	Chr10	7302899	C-T	Hetero	INTERGENIC
SBS	Chr10	12934959	T-C	Hetero	INTERGENIC
SBS	Chr10	16383505	A-G	Hetero	INTRON
SBS	Chr10	16383506	G-T	Hetero	INTRON
SBS	Chr10	16383507	G-A	Hetero	INTRON
SBS	Chr11	29073510	T-C	Homo	INTERGENIC
SBS	Chr12	7754287	C-A	Homo	INTERGENIC
SBS	Chr12	10464181	A-T	Homo	INTERGENIC
SBS	Chr12	17547742	T-C	Homo	INTERGENIC
SBS	Chr12	22448156	C-A	Hetero	INTERGENIC
SBS	Chr12	24555643	G-T	Homo	INTRON
SBS	Chr12	26548935	A-T	Hetero	INTERGENIC
SBS	Chr12	26826734	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2429329	2429331	2
Deletion	Chr4	3416809	3416811	2
Deletion	Chr7	3721743	3721747	4
Deletion	Chr5	10923001	10948000	24999
Deletion	Chr4	24495786	24495792	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	14621641	14962616
Inversion	Chr12	17189373	17545003
Inversion	Chr11	23803956	23833484	OsKitaake11g190600
Inversion	Chr11	23804611	23833493	OsKitaake11g190600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes