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| Mutant Information |
|---|
| Mutant Name | FN563-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN563-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1371762 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 5365366 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g069600 |
| SBS | Chr1 | 23749770 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 32200248 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 29395614 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 5976757 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 6232528 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 7019985 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7019986 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14768942 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 15037327 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 1303952 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 4868374 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 10503015 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 16051456 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 9242292 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7014180 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 17273612 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 6462847 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 13115099 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21192018 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 25287893 | G-C | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 578289 | 578291 | 2 | |
| Deletion | Chr10 | 1848586 | 1848591 | 5 | |
| Deletion | Chr3 | 6230697 | 6230701 | 4 | |
| Deletion | Chr12 | 10339519 | 10339525 | 6 | |
| Deletion | Chr3 | 11445833 | 11445836 | 3 | |
| Deletion | Chr5 | 12496865 | 12496869 | 4 | |
| Deletion | Chr2 | 13094657 | 13094730 | 73 | |
| Deletion | Chr7 | 13449728 | 13449730 | 2 | |
| Deletion | Chr2 | 18445703 | 18445704 | 1 | |
| Deletion | Chr11 | 20565731 | 20565737 | 6 | |
| Deletion | Chr12 | 22942641 | 22942645 | 4 | |
| Deletion | Chr11 | 24667166 | 24667167 | 1 | OsKitaake11g199800 |
| Deletion | Chr5 | 29066844 | 29066857 | 13 | |
| Deletion | Chr5 | 29612613 | 29612614 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 24269047 | 24269050 | 2 | |
| Insertion | Chr1 | 24396360 | 24396363 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 2464577 | 3285314 | OsKitaake05g039200 |
| Inversion | Chr5 | 2464598 | 3285314 | OsKitaake05g039200 |
| Inversion | Chr8 | 22761887 | 23116904 | |
| Inversion | Chr8 | 22761892 | 23116904 |