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Mutant Information

Mutant Name	FN565-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN565-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9296790 T-C Hetero INTERGENIC
SBS Chr1 19605295 G-T Hetero INTERGENIC
SBS Chr1 25257486 C-A Hetero INTERGENIC
SBS Chr1 40607370 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g441200
SBS Chr2 2121679 C-T Hetero INTERGENIC
SBS Chr2 9800662 T-A Hetero INTERGENIC
SBS Chr2 16634460 C-T Hetero INTERGENIC
SBS Chr2 18214628 C-A Hetero INTRON
SBS Chr2 25081007 C-T Homo INTERGENIC
SBS Chr2 27867611 C-A Homo INTERGENIC
SBS Chr2 34047016 C-A Homo INTERGENIC
SBS Chr3 6549726 T-A Hetero INTERGENIC
SBS Chr3 8083347 A-T Hetero INTERGENIC
SBS Chr3 12269598 G-A Hetero INTRON
SBS Chr3 17903189 G-A Homo INTERGENIC
SBS Chr3 31010967 T-C Hetero SPLICE_SITE_REGION
SBS Chr4 663681 A-T Hetero UTR_3_PRIME
SBS Chr4 13399660 A-T Hetero INTERGENIC
SBS Chr4 13399661 G-T Hetero INTERGENIC
SBS Chr5 784115 A-G Hetero INTERGENIC
SBS Chr5 15838216 C-A Hetero INTERGENIC
SBS Chr5 20756636 G-T Hetero INTERGENIC
SBS Chr6 7628514 A-G Homo INTERGENIC
SBS Chr7 17843451 C-T Hetero INTERGENIC
SBS Chr8 4136526 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 19155839 A-T Hetero INTERGENIC
SBS Chr9 5149440 C-A Homo INTERGENIC
SBS Chr9 20337495 A-G Hetero UTR_5_PRIME
SBS Chr9 20443353 G-A Hetero INTERGENIC
SBS Chr10 14830343 A-G Homo INTERGENIC
SBS Chr11 4917391 A-G Hetero INTERGENIC
SBS Chr12 3590112 G-T Hetero INTERGENIC
SBS Chr12 20674909 C-T Homo INTERGENIC
SBS Chr12 23644485 G-A Hetero INTERGENIC
SBS Chr12 25106448 T-A Homo INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 63633 63634 1
Deletion Chr8 1032844 1032846 2
Deletion Chr6 6563951 6563957 6
Deletion Chr6 8226129 8226130 1
Deletion Chr3 8488081 8488083 2
Deletion Chr8 8855643 8855644 1 OsKitaake08g081332
Deletion Chr4 9744805 9744808 3
Deletion Chr8 11089770 11089777 7
Deletion Chr8 14361275 14361277 2
Deletion Chr12 17575617 17575628 11
Deletion Chr10 18667883 18667885 2
Deletion Chr9 19924001 19968000 43999 6
Deletion Chr8 20277108 20277110 2
Deletion Chr6 22151140 22151146 6
Deletion Chr5 23268781 23268783 2
Deletion Chr7 24135875 24135877 2
Deletion Chr12 25040218 25040226 8
Deletion Chr2 26002878 26002884 6
Deletion Chr6 27704528 27704536 8
Deletion Chr2 28277068 28277072 4
Deletion Chr2 29439223 29439232 9
Deletion Chr7 29641001 29649000 7999 2
Deletion Chr2 33563341 33563343 2
Deletion Chr2 35332312 35332322 10

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 26662393 26662401 7
Insertion Chr11 10377915 10377918 2
Insertion Chr7 12248929 12248931 1
Insertion Chr12 11697894 11697897 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 5951508 6324382
Inversion Chr5 5951513 5951632
Inversion Chr5 5951632 6324388
Inversion Chr5 11157445 11545563 2
Inversion Chr3 27292031 28131415 OsKitaake03g281100
Inversion Chr3 27292037 28131422 OsKitaake03g281100
Inversion Chr1 43842633 43843043

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1763849 Chr5 11157426 OsKitaake05g094900
Translocation Chr8 2479283 Chr5 11150137
Translocation Chr9 21411416 Chr5 27721045
Translocation Chr9 21412513 Chr5 27721039

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9296790	T-C	Hetero	INTERGENIC
SBS	Chr1	19605295	G-T	Hetero	INTERGENIC
SBS	Chr1	25257486	C-A	Hetero	INTERGENIC
SBS	Chr1	40607370	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g441200
SBS	Chr2	2121679	C-T	Hetero	INTERGENIC
SBS	Chr2	9800662	T-A	Hetero	INTERGENIC
SBS	Chr2	16634460	C-T	Hetero	INTERGENIC
SBS	Chr2	18214628	C-A	Hetero	INTRON
SBS	Chr2	25081007	C-T	Homo	INTERGENIC
SBS	Chr2	27867611	C-A	Homo	INTERGENIC
SBS	Chr2	34047016	C-A	Homo	INTERGENIC
SBS	Chr3	6549726	T-A	Hetero	INTERGENIC
SBS	Chr3	8083347	A-T	Hetero	INTERGENIC
SBS	Chr3	12269598	G-A	Hetero	INTRON
SBS	Chr3	17903189	G-A	Homo	INTERGENIC
SBS	Chr3	31010967	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr4	663681	A-T	Hetero	UTR_3_PRIME
SBS	Chr4	13399660	A-T	Hetero	INTERGENIC
SBS	Chr4	13399661	G-T	Hetero	INTERGENIC
SBS	Chr5	784115	A-G	Hetero	INTERGENIC
SBS	Chr5	15838216	C-A	Hetero	INTERGENIC
SBS	Chr5	20756636	G-T	Hetero	INTERGENIC
SBS	Chr6	7628514	A-G	Homo	INTERGENIC
SBS	Chr7	17843451	C-T	Hetero	INTERGENIC
SBS	Chr8	4136526	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	19155839	A-T	Hetero	INTERGENIC
SBS	Chr9	5149440	C-A	Homo	INTERGENIC
SBS	Chr9	20337495	A-G	Hetero	UTR_5_PRIME
SBS	Chr9	20443353	G-A	Hetero	INTERGENIC
SBS	Chr10	14830343	A-G	Homo	INTERGENIC
SBS	Chr11	4917391	A-G	Hetero	INTERGENIC
SBS	Chr12	3590112	G-T	Hetero	INTERGENIC
SBS	Chr12	20674909	C-T	Homo	INTERGENIC
SBS	Chr12	23644485	G-A	Hetero	INTERGENIC
SBS	Chr12	25106448	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	63633	63634	1
Deletion	Chr8	1032844	1032846	2
Deletion	Chr6	6563951	6563957	6
Deletion	Chr6	8226129	8226130	1
Deletion	Chr3	8488081	8488083	2
Deletion	Chr8	8855643	8855644	1	OsKitaake08g081332
Deletion	Chr4	9744805	9744808	3
Deletion	Chr8	11089770	11089777	7
Deletion	Chr8	14361275	14361277	2
Deletion	Chr12	17575617	17575628	11
Deletion	Chr10	18667883	18667885	2
Deletion	Chr9	19924001	19968000	43999	6
Deletion	Chr8	20277108	20277110	2
Deletion	Chr6	22151140	22151146	6
Deletion	Chr5	23268781	23268783	2
Deletion	Chr7	24135875	24135877	2
Deletion	Chr12	25040218	25040226	8
Deletion	Chr2	26002878	26002884	6
Deletion	Chr6	27704528	27704536	8
Deletion	Chr2	28277068	28277072	4
Deletion	Chr2	29439223	29439232	9
Deletion	Chr7	29641001	29649000	7999	2
Deletion	Chr2	33563341	33563343	2
Deletion	Chr2	35332312	35332322	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5951508	6324382
Inversion	Chr5	5951513	5951632
Inversion	Chr5	5951632	6324388
Inversion	Chr5	11157445	11545563	2
Inversion	Chr3	27292031	28131415	OsKitaake03g281100
Inversion	Chr3	27292037	28131422	OsKitaake03g281100
Inversion	Chr1	43842633	43843043

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes