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Mutant Information

Mutant Name	FN566-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN566-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9221357 G-A Hetero INTRON
SBS Chr1 9221358 G-A Hetero INTRON
SBS Chr1 23511327 T-C Hetero INTERGENIC
SBS Chr1 26053672 G-T Hetero INTERGENIC
SBS Chr1 27311011 C-A Hetero INTERGENIC
SBS Chr1 30660461 G-T Homo INTERGENIC
SBS Chr2 31069898 T-A Homo INTERGENIC
SBS Chr3 26590360 G-A Homo SYNONYMOUS_CODING
SBS Chr3 30522397 C-A Homo INTERGENIC
SBS Chr3 34642923 T-A Hetero INTERGENIC
SBS Chr4 8195424 G-A Homo INTERGENIC
SBS Chr4 21736300 G-T Hetero INTERGENIC
SBS Chr4 22055940 C-T Hetero INTERGENIC
SBS Chr5 736576 G-C Homo INTRON
SBS Chr5 1299965 T-G Homo INTERGENIC
SBS Chr5 26021882 G-T Homo INTERGENIC
SBS Chr6 11042292 T-A Hetero INTERGENIC
SBS Chr6 12836409 C-T Hetero INTERGENIC
SBS Chr6 14581101 G-T Hetero INTERGENIC
SBS Chr6 16027798 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g154100
SBS Chr6 16027799 C-A Hetero SYNONYMOUS_CODING
SBS Chr6 17943293 A-G Hetero INTERGENIC
SBS Chr6 19115874 G-A Hetero INTRON
SBS Chr6 20443230 T-C Hetero INTERGENIC
SBS Chr6 21060015 A-T Hetero INTRON
SBS Chr6 30604219 C-T Hetero INTRON
SBS Chr7 5936691 C-T Hetero INTERGENIC
SBS Chr7 13134023 A-T Hetero UTR_3_PRIME
SBS Chr7 21365422 T-A Hetero INTERGENIC
SBS Chr7 26229232 T-A Homo INTRON
SBS Chr8 3619479 C-T Hetero INTERGENIC
SBS Chr8 20018935 C-T Hetero INTERGENIC
SBS Chr9 22531755 G-A Homo INTRON
SBS Chr10 10346733 A-G Homo INTERGENIC
SBS Chr10 10922464 G-A Hetero INTERGENIC
SBS Chr12 5569815 T-A Hetero INTERGENIC
SBS Chr12 15617651 T-G Homo INTERGENIC
SBS Chr12 19878516 T-A Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 433238 433246 8 OsKitaake10g003000
Deletion Chr11 1929272 1929274 2
Deletion Chr2 4078834 4078837 3
Deletion Chr6 6165366 6165375 9
Deletion Chr6 8309398 8309410 12
Deletion Chr12 8904054 8904056 2
Deletion Chr5 10765972 10765974 2
Deletion Chr3 11814562 11814573 11
Deletion Chr11 20162392 20162404 12
Deletion Chr4 20460789 20460791 2 OsKitaake04g110300
Deletion Chr2 26443154 26443156 2
Deletion Chr4 31357188 31357189 1
Deletion Chr1 43537757 43537761 4 OsKitaake01g483000

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 36082270 36082274 3
Insertion Chr4 17683195 17683198 2
Insertion Chr5 821856 821859 2
Insertion Chr10 5594179 5594182 2
Insertion Chr11 21806578 21806581 2
Insertion Chr12 23647311 23647314 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 4097940 4251317
Inversion Chr12 4097949 4251324

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 21036297 Chr3 26388608
Translocation Chr11 21036924 Chr3 26388492 OsKitaake11g166600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9221357	G-A	Hetero	INTRON
SBS	Chr1	9221358	G-A	Hetero	INTRON
SBS	Chr1	23511327	T-C	Hetero	INTERGENIC
SBS	Chr1	26053672	G-T	Hetero	INTERGENIC
SBS	Chr1	27311011	C-A	Hetero	INTERGENIC
SBS	Chr1	30660461	G-T	Homo	INTERGENIC
SBS	Chr2	31069898	T-A	Homo	INTERGENIC
SBS	Chr3	26590360	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	30522397	C-A	Homo	INTERGENIC
SBS	Chr3	34642923	T-A	Hetero	INTERGENIC
SBS	Chr4	8195424	G-A	Homo	INTERGENIC
SBS	Chr4	21736300	G-T	Hetero	INTERGENIC
SBS	Chr4	22055940	C-T	Hetero	INTERGENIC
SBS	Chr5	736576	G-C	Homo	INTRON
SBS	Chr5	1299965	T-G	Homo	INTERGENIC
SBS	Chr5	26021882	G-T	Homo	INTERGENIC
SBS	Chr6	11042292	T-A	Hetero	INTERGENIC
SBS	Chr6	12836409	C-T	Hetero	INTERGENIC
SBS	Chr6	14581101	G-T	Hetero	INTERGENIC
SBS	Chr6	16027798	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g154100
SBS	Chr6	16027799	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	17943293	A-G	Hetero	INTERGENIC
SBS	Chr6	19115874	G-A	Hetero	INTRON
SBS	Chr6	20443230	T-C	Hetero	INTERGENIC
SBS	Chr6	21060015	A-T	Hetero	INTRON
SBS	Chr6	30604219	C-T	Hetero	INTRON
SBS	Chr7	5936691	C-T	Hetero	INTERGENIC
SBS	Chr7	13134023	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	21365422	T-A	Hetero	INTERGENIC
SBS	Chr7	26229232	T-A	Homo	INTRON
SBS	Chr8	3619479	C-T	Hetero	INTERGENIC
SBS	Chr8	20018935	C-T	Hetero	INTERGENIC
SBS	Chr9	22531755	G-A	Homo	INTRON
SBS	Chr10	10346733	A-G	Homo	INTERGENIC
SBS	Chr10	10922464	G-A	Hetero	INTERGENIC
SBS	Chr12	5569815	T-A	Hetero	INTERGENIC
SBS	Chr12	15617651	T-G	Homo	INTERGENIC
SBS	Chr12	19878516	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	433238	433246	8	OsKitaake10g003000
Deletion	Chr11	1929272	1929274	2
Deletion	Chr2	4078834	4078837	3
Deletion	Chr6	6165366	6165375	9
Deletion	Chr6	8309398	8309410	12
Deletion	Chr12	8904054	8904056	2
Deletion	Chr5	10765972	10765974	2
Deletion	Chr3	11814562	11814573	11
Deletion	Chr11	20162392	20162404	12
Deletion	Chr4	20460789	20460791	2	OsKitaake04g110300
Deletion	Chr2	26443154	26443156	2
Deletion	Chr4	31357188	31357189	1
Deletion	Chr1	43537757	43537761	4	OsKitaake01g483000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	4097940	4251317
Inversion	Chr12	4097949	4251324

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes