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Mutant Information

Mutant Name	FN567-1-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN567-1-3 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5572690	T-A	Hetero	INTERGENIC
SBS	Chr1	23907636	C-T	Hetero	INTERGENIC
SBS	Chr1	38385809	C-T	Homo	INTERGENIC
SBS	Chr2	3705183	T-A	Hetero	INTERGENIC
SBS	Chr2	11376166	G-A	Homo	INTERGENIC
SBS	Chr3	19738136	C-G	Hetero	INTERGENIC
SBS	Chr3	31347823	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	36840883	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g411400
SBS	Chr4	2960215	C-T	Homo	INTERGENIC
SBS	Chr4	12891288	T-C	Homo	INTRON
SBS	Chr4	13146580	G-A	Homo	INTERGENIC
SBS	Chr4	13327829	A-G	Homo	INTERGENIC
SBS	Chr4	24443497	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g159000
SBS	Chr4	24526055	C-G	Hetero	INTERGENIC
SBS	Chr5	28750149	G-A	Hetero	INTERGENIC
SBS	Chr5	30017310	C-T	Hetero	INTERGENIC
SBS	Chr6	12047212	C-T	Hetero	INTERGENIC
SBS	Chr6	12082106	A-T	Hetero	INTERGENIC
SBS	Chr7	706395	C-T	Homo	INTERGENIC
SBS	Chr7	7698413	C-T	Homo	INTERGENIC
SBS	Chr7	18043154	G-A	Hetero	INTRON
SBS	Chr7	18585963	G-A	Homo	INTERGENIC
SBS	Chr7	18742407	C-T	Homo	INTERGENIC
SBS	Chr7	22651714	C-A	Hetero	INTERGENIC
SBS	Chr8	1145631	G-T	Homo	INTERGENIC
SBS	Chr8	3914011	C-T	Hetero	INTERGENIC
SBS	Chr8	6711080	C-T	Hetero	INTERGENIC
SBS	Chr8	14431694	C-T	Hetero	INTERGENIC
SBS	Chr8	19351048	C-A	Hetero	INTERGENIC
SBS	Chr9	3967403	C-T	Hetero	INTERGENIC
SBS	Chr9	5944994	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	7499914	G-A	Homo	INTERGENIC
SBS	Chr9	11762929	G-C	Hetero	INTERGENIC
SBS	Chr9	13391750	T-C	Homo	INTERGENIC
SBS	Chr9	17139238	C-T	Hetero	INTERGENIC
SBS	Chr10	112363	A-T	Hetero	UTR_3_PRIME
SBS	Chr10	18944010	G-T	Hetero	INTERGENIC
SBS	Chr10	23773990	G-A	Hetero	INTERGENIC
SBS	Chr11	16182229	C-T	Hetero	INTRON
SBS	Chr11	23520048	C-T	Hetero	INTERGENIC
SBS	Chr12	8677644	C-T	Homo	INTERGENIC
SBS	Chr12	18084222	T-C	Hetero	INTERGENIC

Deletions: 5

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	7612906	7612908	2
Deletion	Chr7	8855001	9795000	939999	43
Deletion	Chr7	20601154	20601158	4
Deletion	Chr11	21338404	21338405	1
Deletion	Chr2	33815950	33815951	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	24603759	24603763	3	OsKitaake01g237700
Insertion	Chr2	9060136	9060140	3
Insertion	Chr5	14329035	14329038	2
Insertion	Chr6	24187831	24187834	2
Insertion	Chr9	17141437	17141440	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	16755019	Chr7	8796019

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes