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Mutant Information

Mutant Name	FN568-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN568-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3472996 C-T Hetero INTERGENIC
SBS Chr1 22989715 T-C Homo INTRON
SBS Chr1 39703542 G-A Hetero INTERGENIC
SBS Chr2 1385632 T-C Hetero INTRON
SBS Chr2 3945597 A-G Homo NON_SYNONYMOUS_CODING OsKitaake02g056600
SBS Chr2 18470630 C-T Hetero INTERGENIC
SBS Chr2 19370636 T-C Hetero INTERGENIC
SBS Chr2 30536445 C-A Homo INTERGENIC
SBS Chr2 30536463 G-A Homo INTERGENIC
SBS Chr2 30536464 C-T Homo INTERGENIC
SBS Chr2 31908765 A-C Homo NON_SYNONYMOUS_CODING OsKitaake02g325400
SBS Chr2 32452624 A-G Homo NON_SYNONYMOUS_CODING OsKitaake02g331900
SBS Chr3 4592997 C-T Hetero INTERGENIC
SBS Chr3 25264303 T-A Homo INTERGENIC
SBS Chr4 4698315 C-T Hetero INTERGENIC
SBS Chr4 34901981 G-A Hetero INTRON
SBS Chr5 1765064 C-T Hetero INTERGENIC
SBS Chr5 3665923 T-G Hetero INTERGENIC
SBS Chr5 6698983 T-G Hetero INTRON
SBS Chr5 7227265 G-A Homo INTERGENIC
SBS Chr6 27160496 C-T Hetero INTERGENIC
SBS Chr7 29261820 A-G Homo INTRON
SBS Chr8 2954029 T-C Hetero INTERGENIC
SBS Chr8 20924260 G-A Homo NON_SYNONYMOUS_CODING OsKitaake08g156900
SBS Chr9 1727753 C-A Homo INTERGENIC
SBS Chr9 4579205 G-C Homo INTERGENIC
SBS Chr9 6895997 A-T Homo INTERGENIC
SBS Chr9 9474742 A-C Homo INTERGENIC
SBS Chr11 24377860 G-A Hetero INTERGENIC
SBS Chr12 3059615 T-C Hetero INTERGENIC
SBS Chr12 11939812 A-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 823077 823090 13
Deletion Chr1 1380233 1380235 2
Deletion Chr1 3891005 3891007 2
Deletion Chr7 6550287 6550288 1
Deletion Chr9 10509661 10509663 2
Deletion Chr2 10513001 10573000 59999 3
Deletion Chr7 12524540 12524541 1
Deletion Chr3 18170010 18170011 1
Deletion Chr6 22806922 22806923 1
Deletion Chr11 27640885 27640995 110
Deletion Chr2 29267065 29267074 9
Deletion Chr5 30165667 30165668 1
Deletion Chr1 41238001 41424000 185999 26

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 6645542 6645545 2
Insertion Chr10 20712997 20713000 2
Insertion Chr5 12965974 12965976 1 OsKitaake05g100400

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 11994460 Chr5 18584630 OsKitaake10g071500
Translocation Chr10 11994463 Chr5 18582931 OsKitaake10g071500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3472996	C-T	Hetero	INTERGENIC
SBS	Chr1	22989715	T-C	Homo	INTRON
SBS	Chr1	39703542	G-A	Hetero	INTERGENIC
SBS	Chr2	1385632	T-C	Hetero	INTRON
SBS	Chr2	3945597	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g056600
SBS	Chr2	18470630	C-T	Hetero	INTERGENIC
SBS	Chr2	19370636	T-C	Hetero	INTERGENIC
SBS	Chr2	30536445	C-A	Homo	INTERGENIC
SBS	Chr2	30536463	G-A	Homo	INTERGENIC
SBS	Chr2	30536464	C-T	Homo	INTERGENIC
SBS	Chr2	31908765	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g325400
SBS	Chr2	32452624	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g331900
SBS	Chr3	4592997	C-T	Hetero	INTERGENIC
SBS	Chr3	25264303	T-A	Homo	INTERGENIC
SBS	Chr4	4698315	C-T	Hetero	INTERGENIC
SBS	Chr4	34901981	G-A	Hetero	INTRON
SBS	Chr5	1765064	C-T	Hetero	INTERGENIC
SBS	Chr5	3665923	T-G	Hetero	INTERGENIC
SBS	Chr5	6698983	T-G	Hetero	INTRON
SBS	Chr5	7227265	G-A	Homo	INTERGENIC
SBS	Chr6	27160496	C-T	Hetero	INTERGENIC
SBS	Chr7	29261820	A-G	Homo	INTRON
SBS	Chr8	2954029	T-C	Hetero	INTERGENIC
SBS	Chr8	20924260	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g156900
SBS	Chr9	1727753	C-A	Homo	INTERGENIC
SBS	Chr9	4579205	G-C	Homo	INTERGENIC
SBS	Chr9	6895997	A-T	Homo	INTERGENIC
SBS	Chr9	9474742	A-C	Homo	INTERGENIC
SBS	Chr11	24377860	G-A	Hetero	INTERGENIC
SBS	Chr12	3059615	T-C	Hetero	INTERGENIC
SBS	Chr12	11939812	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	823077	823090	13
Deletion	Chr1	1380233	1380235	2
Deletion	Chr1	3891005	3891007	2
Deletion	Chr7	6550287	6550288	1
Deletion	Chr9	10509661	10509663	2
Deletion	Chr2	10513001	10573000	59999	3
Deletion	Chr7	12524540	12524541	1
Deletion	Chr3	18170010	18170011	1
Deletion	Chr6	22806922	22806923	1
Deletion	Chr11	27640885	27640995	110
Deletion	Chr2	29267065	29267074	9
Deletion	Chr5	30165667	30165668	1
Deletion	Chr1	41238001	41424000	185999	26

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	11994460	Chr5	18584630	OsKitaake10g071500
Translocation	Chr10	11994463	Chr5	18582931	OsKitaake10g071500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes