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| Mutant Information |
|---|
| Mutant Name | FN569-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN569-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5770165 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 31808910 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 4379069 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g061200 |
| SBS | Chr2 | 32790469 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 15493524 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 12037891 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 22050561 | C-T | Homo | INTRON | |
| SBS | Chr4 | 30935136 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 24232827 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 10108312 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 26572903 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 163142 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 1178251 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g016200 |
| SBS | Chr8 | 10400982 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14375050 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15016666 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17127748 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 11595170 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14220237 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 2211139 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 4488496 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 15601063 | A-G | Hetero | INTRON | |
| SBS | Chr10 | 21683993 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 10014507 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 10089422 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 13217450 | C-G | Homo | INTERGENIC | |
| SBS | Chr12 | 16761837 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 24917270 | G-C | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 20796 | 20797 | 1 | |
| Deletion | Chr6 | 21854 | 21855 | 1 | |
| Deletion | Chr2 | 4376965 | 4376966 | 1 | OsKitaake02g061200 |
| Deletion | Chr10 | 4755001 | 4801000 | 45999 | 2 |
| Deletion | Chr10 | 5691001 | 5702000 | 10999 | OsKitaake10g039400 |
| Deletion | Chr10 | 6999001 | 7013000 | 13999 | |
| Deletion | Chr12 | 9365001 | 9406000 | 40999 | 5 |
| Deletion | Chr2 | 13818281 | 13818435 | 154 | |
| Deletion | Chr9 | 16912451 | 16912520 | 69 | |
| Deletion | Chr12 | 25386161 | 25386163 | 2 | |
| Deletion | Chr2 | 30073583 | 30073584 | 1 |
Insertions: 5
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 3521551 | 3837459 | 2 |
| Inversion | Chr3 | 3521554 | 3837466 | 2 |
| Inversion | Chr10 | 4802205 | 4894605 | OsKitaake10g035400 |
| Inversion | Chr10 | 5346944 | 5690777 | |
| Inversion | Chr10 | 6842462 | 6888461 | |
| Inversion | Chr5 | 21999232 | 21999483 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 4026562 | Chr4 | 31723790 | OsKitaake05g048600 |
| Translocation | Chr5 | 4049367 | Chr2 | 31988515 | |
| Translocation | Chr4 | 36315941 | Chr3 | 821920 | |
| Translocation | Chr4 | 36315947 | Chr3 | 822006 |