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| Mutant Information |
|---|
| Mutant Name | FN570-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN570-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8913352 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 9552503 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 10180368 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 41142563 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 42150195 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 8925545 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 12958437 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 12958457 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 20099693 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 20150220 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24277640 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 26433235 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 7235905 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 11616093 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17172413 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 31058066 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g241500 |
| SBS | Chr6 | 7820149 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 9023869 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 3881824 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 10039295 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g101950 |
| SBS | Chr11 | 14846259 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 14846263 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 28662609 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 20654815 | C-A | Hetero | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 22561 | 22562 | 1 | |
| Deletion | Chr3 | 6718001 | 6753000 | 34999 | 5 |
| Deletion | Chr10 | 9430696 | 9430697 | 1 | |
| Deletion | Chr11 | 28637497 | 28637500 | 3 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 8689734 | 8689737 | 2 | |
| Insertion | Chr12 | 4052293 | 4052296 | 2 | |
| Insertion | Chr1 | 17339452 | 17339455 | 2 | OsKitaake01g178800  |
| Insertion | Chr5 | 16011110 | 16011112 | 1 | |
| Insertion | Chr6 | 53662 | 53664 | 1 | |
| Insertion | Chr6 | 7853292 | 7853295 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 25802769 | 26236001 | OsKitaake05g226900 |
| Inversion | Chr3 | 31615463 | 31681226 | |
| Inversion | Chr3 | 31615466 | 31681226 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 12982847 | Chr1 | 10513594 | OsKitaake01g131300 |