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Mutant Information

Mutant Name	FN571-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN571-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17354740 T-C Hetero INTERGENIC
SBS Chr1 21561497 G-A Hetero INTERGENIC
SBS Chr1 34731943 C-T Hetero INTERGENIC
SBS Chr1 40072152 C-T Homo UTR_5_PRIME
SBS Chr2 4704090 C-T Hetero UTR_3_PRIME
SBS Chr2 4755354 C-T Hetero INTERGENIC
SBS Chr2 21287405 A-C Hetero UTR_3_PRIME
SBS Chr2 26296102 A-T Hetero INTERGENIC
SBS Chr2 28549073 C-T Homo INTERGENIC
SBS Chr3 1591057 G-C Homo NON_SYNONYMOUS_CODING OsKitaake03g022400
SBS Chr3 13295058 T-C Hetero INTERGENIC
SBS Chr3 21727886 A-G Homo INTERGENIC
SBS Chr3 37442620 A-C Homo INTERGENIC
SBS Chr4 8748257 G-A Hetero INTERGENIC
SBS Chr4 13904677 T-A Hetero INTERGENIC
SBS Chr4 14716936 C-T Hetero INTERGENIC
SBS Chr4 16422765 G-C Hetero INTERGENIC
SBS Chr6 9104766 T-C Hetero INTERGENIC
SBS Chr6 10768418 C-G Hetero INTERGENIC
SBS Chr6 12362278 A-G Hetero INTERGENIC
SBS Chr6 28388300 G-C Homo SYNONYMOUS_CODING
SBS Chr8 2993814 C-T Hetero INTERGENIC
SBS Chr8 5257743 G-A Hetero INTERGENIC
SBS Chr8 21229069 T-C Hetero INTERGENIC
SBS Chr8 21446986 A-T Hetero INTERGENIC
SBS Chr9 20736320 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g176200
SBS Chr10 14151189 G-A Homo INTERGENIC
SBS Chr11 9334062 C-A Homo INTERGENIC
SBS Chr11 12405549 G-A Homo INTERGENIC
SBS Chr11 25287497 C-T Hetero INTERGENIC
SBS Chr12 5270829 A-T Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2704318 2704327 9
Deletion Chr1 8357263 8357264 1
Deletion Chr8 13915933 13915934 1
Deletion Chr10 15787381 15787383 2
Deletion Chr11 17450478 17450483 5
Deletion Chr4 18748225 18748235 10
Deletion Chr10 23858976 23858989 13
Deletion Chr6 24376190 24376199 9

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 2768573 2768576 2
Insertion Chr11 2165605 2165608 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 1229110 1450306 OsKitaake02g022450
Inversion Chr2 1236275 1450308 OsKitaake02g022450
Inversion Chr2 14864541 15529060
Inversion Chr2 14864550 15529058

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 28310950 Chr2 28165392

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17354740	T-C	Hetero	INTERGENIC
SBS	Chr1	21561497	G-A	Hetero	INTERGENIC
SBS	Chr1	34731943	C-T	Hetero	INTERGENIC
SBS	Chr1	40072152	C-T	Homo	UTR_5_PRIME
SBS	Chr2	4704090	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	4755354	C-T	Hetero	INTERGENIC
SBS	Chr2	21287405	A-C	Hetero	UTR_3_PRIME
SBS	Chr2	26296102	A-T	Hetero	INTERGENIC
SBS	Chr2	28549073	C-T	Homo	INTERGENIC
SBS	Chr3	1591057	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g022400
SBS	Chr3	13295058	T-C	Hetero	INTERGENIC
SBS	Chr3	21727886	A-G	Homo	INTERGENIC
SBS	Chr3	37442620	A-C	Homo	INTERGENIC
SBS	Chr4	8748257	G-A	Hetero	INTERGENIC
SBS	Chr4	13904677	T-A	Hetero	INTERGENIC
SBS	Chr4	14716936	C-T	Hetero	INTERGENIC
SBS	Chr4	16422765	G-C	Hetero	INTERGENIC
SBS	Chr6	9104766	T-C	Hetero	INTERGENIC
SBS	Chr6	10768418	C-G	Hetero	INTERGENIC
SBS	Chr6	12362278	A-G	Hetero	INTERGENIC
SBS	Chr6	28388300	G-C	Homo	SYNONYMOUS_CODING
SBS	Chr8	2993814	C-T	Hetero	INTERGENIC
SBS	Chr8	5257743	G-A	Hetero	INTERGENIC
SBS	Chr8	21229069	T-C	Hetero	INTERGENIC
SBS	Chr8	21446986	A-T	Hetero	INTERGENIC
SBS	Chr9	20736320	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g176200
SBS	Chr10	14151189	G-A	Homo	INTERGENIC
SBS	Chr11	9334062	C-A	Homo	INTERGENIC
SBS	Chr11	12405549	G-A	Homo	INTERGENIC
SBS	Chr11	25287497	C-T	Hetero	INTERGENIC
SBS	Chr12	5270829	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2704318	2704327	9
Deletion	Chr1	8357263	8357264	1
Deletion	Chr8	13915933	13915934	1
Deletion	Chr10	15787381	15787383	2
Deletion	Chr11	17450478	17450483	5
Deletion	Chr4	18748225	18748235	10
Deletion	Chr10	23858976	23858989	13
Deletion	Chr6	24376190	24376199	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1229110	1450306	OsKitaake02g022450
Inversion	Chr2	1236275	1450308	OsKitaake02g022450
Inversion	Chr2	14864541	15529060
Inversion	Chr2	14864550	15529058

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes